Difference between revisions of "Part:BBa K2556011"

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   <img src="https://static.igem.org/mediawiki/2018/6/62/T--ZJUT-China--part4.png" alt="" width="600px">
 
   <img src="https://static.igem.org/mediawiki/2018/6/62/T--ZJUT-China--part4.png" alt="" width="600px">
 
   <p>Table 1.Number of transformants</p>
 
   <p>Table 1.Number of transformants</p>
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   <p>Figure 1. Results of transformation experiments</p>
 
   <p>Figure 1. Results of transformation experiments</p>
 
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Revision as of 13:59, 14 October 2018

Light-involved system control the expression of Cas9


YF1 is a fusion protein of a LOV protein domain and histidine kinase. In the dark YF1 phosphorylates FixJ response regulator and phospholylated FixJ response regulator activates Pfixk2 promoter. In blue light(480 nm) YF1 don’t phosphorylate FixJ response regulator, so Pfixk2 promoter isn’t activated.

T--ZJUT-China--part5.png

Characterize

The strain we used is E.coli Bl21 ΔpanD,which is a panD mutant, the original panD gene was replaced by the chloramphenicol resistance gene in the genome(cm).First, we need to prepare E.coli Bl21 ΔpanD competent cells and transform dusk-Cas9-pUC57(contain BBa_K2556011) plasmid into it.Then, we need to culture the transformants and prepare them into competent cells, and then transform pTargetF-cm plasmid,pSU20 plasmid (as control) and pTargetF-panD plasmid (as control) into it,respectively.Finally, the transformed plates were placed in blue and dark devices overnight.

Experimental Results

Under light and dark conditions, the transformation efficiencies with pTargetF-panD were 1.185 and 1.295 folds of thoese with pTargetF-cm respectively, demonstrating that pTargetF-cm could guide Cas9 to the cm gene on the genome and resulted in the decrease of transformation efficiency. The result also reflect that the blue light provided cannot completely suppress the expression of CRISPR/Cas9. It is also remarkable that the transformation efficiency with pTargetF-cm under the dark condition was lower than that under the light condition, indicating that the CRISPR/Cas9 system showed stronger activity under dark condition, achieving the purpose of cutting a resistance gene with the light-controlled CRISPR/Cas9 system.

Table 1.Number of transformants

Figure 1. Results of transformation experiments

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
    Illegal NheI site found at 3356
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 5635
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 605
    Illegal NgoMIV site found at 677
    Illegal NgoMIV site found at 767
    Illegal NgoMIV site found at 785
    Illegal NgoMIV site found at 1297
    Illegal NgoMIV site found at 1590
    Illegal NgoMIV site found at 1684
    Illegal AgeI site found at 319
    Illegal AgeI site found at 1465
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 1354
    Illegal BsaI.rc site found at 218

References

1
2
3

Functional Parameters