Difference between revisions of "DAS - Distributed Annotation System"
| Line 7: | Line 7: | ||
==DAS DSN Server== | ==DAS DSN Server== | ||
| − | http://parts.mit.edu/das/dsn | + | '''http://parts.mit.edu/das/dsn''' |
* parts.mit.edu is a valid DAS server it will return the XML for the list of DAS services available on the server. | * parts.mit.edu is a valid DAS server it will return the XML for the list of DAS services available on the server. | ||
==DAS Protein Annotation Server== | ==DAS Protein Annotation Server== | ||
| − | http://parts.mit.edu/protein_annotations/entry_points | + | '''http://parts.mit.edu/protein_annotations/entry_points''' |
* A list of protein coding sequence parts that have swissprot numbers and can be understood by the DAS system. | * A list of protein coding sequence parts that have swissprot numbers and can be understood by the DAS system. | ||
| − | http://parts.mit.edu/protein_annotations/types | + | '''http://parts.mit.edu/protein_annotations/types''' |
* A list of the types that are valid for protein_annotations | * A list of the types that are valid for protein_annotations | ||
| − | http://parts.mit.edu/das/protein_annotations/features?selection=UniprotNumber | + | '''http://parts.mit.edu/das/protein_annotations/features?selection=UniprotNumber''' |
* Identification that the sequence exists | * Identification that the sequence exists | ||
| − | http://parts.mit.edu/das/protein_annotations/dna?selection=PartName:firstbase,lastbase | + | '''http://parts.mit.edu/das/protein_annotations/dna?selection=PartName:firstbase,lastbase''' |
*Returns XML containing the sequence for the given part from the firstbase to the last base specified | *Returns XML containing the sequence for the given part from the firstbase to the last base specified | ||
| Line 28: | Line 28: | ||
| − | http://parts.mit.edu/das/parts/entry_points | + | '''http://parts.mit.edu/das/parts/entry_points''' |
* Returns an XML list of all available parts in the registry. The information includes the part name and sequence length. | * Returns an XML list of all available parts in the registry. The information includes the part name and sequence length. | ||
| − | http://parts.mit.edu/das/parts/features?segment=PartName:firstbase,lastbase | + | '''http://parts.mit.edu/das/parts/features?segment=PartName:firstbase,lastbase''' |
* Returns easy to read XML listing each feature in the part between firstbase and lastbase. | * Returns easy to read XML listing each feature in the part between firstbase and lastbase. | ||
| − | http://parts.mit.edu/das/dna?segment=PartName:firstbase,lastbase | + | '''http://parts.mit.edu/das/dna?segment=PartName:firstbase,lastbase''' |
* Returns the easy to read XML listing of the sequence for the part | * Returns the easy to read XML listing of the sequence for the part | ||
Revision as of 13:45, 26 May 2008
"The distributed annotation system (DAS) is a client-server system in which a single client integrates information from multiple servers. It allows a single machine to gather up genome annotation information from multiple distant web sites, collate the information, and display it to the user in a single view. Little coordination is needed among the various information providers." - Wikipedia
The DAS interface to the Registry can provide sequence and feature information about any part in the Registry.
DAS information is available via the HTTP protocol. (NOTE: the DAS interface is only operating on parts.mit.edu at this time.)
DAS DSN Server
http://parts.mit.edu/das/dsn
- parts.mit.edu is a valid DAS server it will return the XML for the list of DAS services available on the server.
DAS Protein Annotation Server
http://parts.mit.edu/protein_annotations/entry_points
- A list of protein coding sequence parts that have swissprot numbers and can be understood by the DAS system.
http://parts.mit.edu/protein_annotations/types
- A list of the types that are valid for protein_annotations
http://parts.mit.edu/das/protein_annotations/features?selection=UniprotNumber
- Identification that the sequence exists
http://parts.mit.edu/das/protein_annotations/dna?selection=PartName:firstbase,lastbase
- Returns XML containing the sequence for the given part from the firstbase to the last base specified
DAS Parts Server
http://parts.mit.edu/das/parts/entry_points
- Returns an XML list of all available parts in the registry. The information includes the part name and sequence length.
http://parts.mit.edu/das/parts/features?segment=PartName:firstbase,lastbase
- Returns easy to read XML listing each feature in the part between firstbase and lastbase.
http://parts.mit.edu/das/dna?segment=PartName:firstbase,lastbase
- Returns the easy to read XML listing of the sequence for the part