Difference between revisions of "Part:BBa K2633000:Design"
(→Source) |
|||
| Line 13: | Line 13: | ||
===Source=== | ===Source=== | ||
| − | The amino acid sequence of acdS comes from isolated endophytic bacteria Pseudomonas sp. 1C2P-04, and primers for its amplification were based on Pseudomonas sp. UW4. | + | The amino acid sequence of acdS comes from isolated endophytic bacteria Pseudomonas sp. 1C2P-04, and primers for its amplification were based on Pseudomonas sp. UW4. The promoter, RBS, eGFP with His-tag, and terminator are derived from pJK_proB_eGFP (Bienick et al. 2014). |
===References=== | ===References=== | ||
Revision as of 16:53, 10 October 2018
proB + RBS + Pseudomonas acdS+ linker + GFPmut3b + term
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 824
Illegal XhoI site found at 1882 - 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 601
- 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI.rc site found at 39
Illegal BsaI.rc site found at 1811
Design Notes
The part is designed to produce a fusion protein of the plant-growth promoting enzyme 1-aminocyclopropane-1-carboxylate deaminase (ACCD) and enhanced green fluorescent protein (eGFP or GFPmut3b). Organisms which express ACCD have been implicating in promoting resilience to osmotic stresses such as drought and soil salinization. The attachment of the eGFP domain by a flexible linker allows for visualization of bacteria carrying the plasmid in plant tissues. It also improves ability to select transformed colonies in bacterial strains with high number of non-transformed colonies. There is a His tag for optional purification of the protein.
Source
The amino acid sequence of acdS comes from isolated endophytic bacteria Pseudomonas sp. 1C2P-04, and primers for its amplification were based on Pseudomonas sp. UW4. The promoter, RBS, eGFP with His-tag, and terminator are derived from pJK_proB_eGFP (Bienick et al. 2014).