Difference between revisions of "Part:BBa K2555004"
Line 18: Line 18:
 
<partinfo>BBa_K2555004 parameters</partinfo>
 
<partinfo>BBa_K2555004 parameters</partinfo>
 
<!-- -->
 
<!-- -->
 +
<h4>Results</h4>
 +
<img src="https://static.igem.org/mediawiki/2018/5/58/T--BFSUICC-China--o4-DR.jpeg">
 
<h3>References:</h3>
 
<h3>References:</h3>
 
<p>(1)Outten FW, Outten CE, Hale J, O'Halloran TV. Transcriptional activation of an Escherichia coli copper efflux regulon by the chromosomal MerR homologue, cueR. Journal of Biological Chemistry 2000;275:31024-9.</p>
 
<p>(1)Outten FW, Outten CE, Hale J, O'Halloran TV. Transcriptional activation of an Escherichia coli copper efflux regulon by the chromosomal MerR homologue, cueR. Journal of Biological Chemistry 2000;275:31024-9.</p>

Revision as of 03:54, 10 October 2018


PcopA-RiboJ-RBS-sfGFP-PBAD-RBS-CueR

BBa_K2555004 contains 2555000 and 25550002.BBa_K2555000 including the promoter of cop A, ribosome binding site, self-cleaving RNA ribozyme RiboJ, and protein coding region-sfGFP. In E.coli. As a ATPase, cop A is regulated by a copper-responsive protein CueR(1). The promoter of cop A is more sensitive to copper than the other two copper-responsive promoter.RiboJ is an insulator commonly used in genetic circuits to prevent unexpected interactions between neighboring parts. Insulation with RiboJ may increase protein abundance. sfGFP increased resistance to denaturation, improved folding kinetics, and increased resistance to aggregation during refolding(2). sfGFP has been proven to be very useful for improved protein detection(3). Terminator L3SP22 is utilized for construction of a composite part.BBa_K2555002 contains pBAD (L-arabinose inducing promoter) with RBS and CueR (a transcription factor that binds onto pCopA of BBa_K2555000). E. coli cells use CueR to regulate the cytoplasmic copper concentration. Arabinose concentration controls the expression of CueR in the construct.CueR behaves as a net activator or a net repressor under different copper concentrations(4)


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 2447
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 2386
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 2221
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 1121
    Illegal SapI site found at 2203
    Illegal SapI.rc site found at 364


Results

<img src="T--BFSUICC-China--o4-DR.jpeg">

References:

(1)Outten FW, Outten CE, Hale J, O'Halloran TV. Transcriptional activation of an Escherichia coli copper efflux regulon by the chromosomal MerR homologue, cueR. Journal of Biological Chemistry 2000;275:31024-9.

(2)Andrews BT, Schoenfish AR, Roy M, Waldo G and Jennings PA. The rough energy landscape of superfolder GFP is linked to the chromophore. J Mol Biol 2007;373: 476-490.

(3) Cabantous S and Waldo G. In vivo and in vitro protein solubility assays using split GFP. Nat Methods 2006; 3: 845-854.

(4)Danya J. Martell, Chandra P. Joshi, Ahmed Gaballa, Ace George Santiago, Tai-Yen Chen, Won Jung, John D. Helmann, and Peng Chen. Metalloregulator CueR biases RNA polymerase’s kinetic sampling of dead-end or open complex to repress or activate transcription.Proc Natl Acad Sci U S A. 2015; Nov 3; 112(44): 13467–13472.