Difference between revisions of "Part:BBa K2560257:Design"

 
(→‎Design Notes)
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===Design Notes===
 
===Design Notes===
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To have a small linker to the 3' coding region, a GGG (glycine) was added as well as an ATG (methionine) as startcodon.
+
To have a small linker to the 3' coding region, a GGG (glycine) was added as well as an ATG (methionine) as startcodon. This region is flanked by overhangs which are Phytobrick- and MoClo-compatible and by two BsaI recognition sites (Weber et al., 2011).  
  
 +
If the Streptag shall be fused to the 5' end (N-terminus of the protein), use this part, for 3' fusion (C-terminus of the protein) use [https://parts.igem.org/wiki/index.php?title=Part:BBa_K2560258 BBa_K2560258].
  
 +
GGTCTCG<b>AATG</b>-coding_region-<b>GATG</b>TGAGACC
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 +
The sequence was codonoptimized for <i>V. natriegens</i> ATCC 14048.
  
 
===Source===
 
===Source===

Revision as of 21:40, 29 September 2018


4x Streptag for N-terminal protein tagging


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

To have a small linker to the 3' coding region, a GGG (glycine) was added as well as an ATG (methionine) as startcodon. This region is flanked by overhangs which are Phytobrick- and MoClo-compatible and by two BsaI recognition sites (Weber et al., 2011).

If the Streptag shall be fused to the 5' end (N-terminus of the protein), use this part, for 3' fusion (C-terminus of the protein) use BBa_K2560258.

GGTCTCGAATG-coding_region-GATGTGAGACC

The sequence was codonoptimized for V. natriegens ATCC 14048.

Source

Source of the part:

The sequence of this part was used from Addgene (Plasmid #55181). To have a small linker to the 3' coding region, a GGG (glycine) was added as well as an ATG (methionine) as startcodon.

The part was codonoptimized for V. natriegens and then synthetisized by IDT and integrated into the vector BBa_K2560002 via BsmBI

References