Difference between revisions of "Part:BBa K2560252:Design"

 
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===Design Notes===
 
===Design Notes===
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The part contains the whole coding region from the accBC gene of C. glutamicum (NCgl0670) without the startcodon. This region is flanked by overhangs which are Phytobrick- and MoClo-compatible and by two BsmBI recognition sites (Weber et al., 2011). If accBC shall be used with an 5' tag use BBa_K2560254, if there is no need for tagging, use this part.
+
The part contains the whole coding region from the <i>accBC</i> gene of <i>C. glutamicum</i> (NCgl0670) without the startcodon. This region is flanked by overhangs which are Phytobrick- and MoClo-compatible and by two BsmBI recognition sites (Weber et al., 2011). If <i>accBC</i> shall be used with an 5' tag use [https://parts.igem.org/wiki/index.php?title=Part:BBa_K2560254 BBa_K2560254], if there is no need for tagging, use this part.
  
−
AACGTCTCGCTCGAATG-coding_region-GCTTTGAGGGAGACGAA
+
AACGTCTCGCTCG<b>AATG</b>-coding_region-<b>GCTT</b>TGAGGGAGACGAA
  
−
The sequence was codonoptimized for V. natriegens ATCC 14048.  
+
The sequence was codonoptimized for <i>V. natriegens</i> ATCC 14048.  
  
  
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Source of the part:
 
Source of the part:
  
−
Genome: Corynebacterium glutamicum ATCC 13032
+
Genome: <i>Corynebacterium glutamicum</i> ATCC 13032
  
 
Accession number of gene: NCgl0678
 
Accession number of gene: NCgl0678
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Accession number of encoded protein: NP_599940.1
 
Accession number of encoded protein: NP_599940.1
  
−
accD was codonoptimized for V. natriegens and then synthetisized and integrated into the vector BBa_K2560002 via BsmBI  
+
<i>accD</i> was codonoptimized for <i>V. natriegens</i> and then synthetisized and integrated into the vector [https://parts.igem.org/wiki/index.php?title=Part:BBa_K2560002 BBa_K2560002]via BsmBI  
  
 
===References===
 
===References===
 +
Weber E., Engler C., Gruetzner R., Werner S., Marillonnet S. (2011). A modular cloning system for standardized assembly of multigene constructs. PLoS One 6:e16765. 10.1371/journal.pone.0016765

Revision as of 18:02, 28 September 2018


accD subunit from C. glutamicum, codonoptimized for V. natriegens


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 768
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 277
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

The part contains the whole coding region from the accBC gene of C. glutamicum (NCgl0670) without the startcodon. This region is flanked by overhangs which are Phytobrick- and MoClo-compatible and by two BsmBI recognition sites (Weber et al., 2011). If accBC shall be used with an 5' tag use BBa_K2560254, if there is no need for tagging, use this part.

AACGTCTCGCTCGAATG-coding_region-GCTTTGAGGGAGACGAA

The sequence was codonoptimized for V. natriegens ATCC 14048.


Source

Source of the part:

Genome: Corynebacterium glutamicum ATCC 13032

Accession number of gene: NCgl0678

Accession number of encoded protein: NP_599940.1

accD was codonoptimized for V. natriegens and then synthetisized and integrated into the vector BBa_K2560002via BsmBI

References

Weber E., Engler C., Gruetzner R., Werner S., Marillonnet S. (2011). A modular cloning system for standardized assembly of multigene constructs. PLoS One 6:e16765. 10.1371/journal.pone.0016765