Difference between revisions of "Part:BBa K2629003:Experience"
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mettre schema
 
mettre schema
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<p> Unfortunately, results were too heterogenous to bring any conclusions. Indeed, the number of colonies, for the 1:100 and 1:200 ratios, expected was not good enought (there is a possibility that the detector was badly digested and was consequently transformed). </p>
  
 
<h1> Test B: <I> Is this part able to detect specifically the target for which it has been designed ? </I> </h1>
 
<h1> Test B: <I> Is this part able to detect specifically the target for which it has been designed ? </I> </h1>
  
  
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<p> In order to evaluate the specificity of the detector part of BBa_K2629003, different “false target” sequences have been synthesized and tested with the detector.  
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<p> In order to evaluate the specificity of the detector part of BBa_K2629003, different “false target” sequences have been synthesized.  
 
An algorithm was made by iGEM Grenoble Alpes 2017 to give random sequences, more or less homologous to the original target with 5%, 15%, 25% and 50% randomly modified pairs of nucleotides (length is kept 36bp).  <br>
 
An algorithm was made by iGEM Grenoble Alpes 2017 to give random sequences, more or less homologous to the original target with 5%, 15%, 25% and 50% randomly modified pairs of nucleotides (length is kept 36bp).  <br>
 
The algorithm can be found here : </p><br>
 
The algorithm can be found here : </p><br>
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<center>https://static.igem.org/mediawiki/parts/9/96/T--grenoble-alpes--RESalgo.png</center>
 
<center>https://static.igem.org/mediawiki/parts/9/96/T--grenoble-alpes--RESalgo.png</center>
  
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<p>These 50%, 75%, 85%, 95% homologous sequences to the target were tested 6 times.
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<p>Unfortunately, we did not have the opportunity and the time to carry out these experiments. </p>
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Unfortunately, results were too heterogenous to bring any conclusions, notably about the number of false positive CFU (there is a possibility that the detector was badly digested and was consequently transformed) or the supposedly increasing number of colonies. Indeed, transformation includes lot of steps with specific parameters, that all vary a little between each experiment and may explain the lack of reproducibility. </p>
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===User Reviews===
 
===User Reviews===

Revision as of 13:45, 23 September 2018

Experiments were done on a plasmid in which the probe has been inserted, thanks the Gibson technic, in psB1C3-BBa_J04450.

Results of the clonning of the BFP gene instead of BBa_J04450

sequencage


Test A: Is this part able to detect the target for which it has been designed ?


mettre schema

Unfortunately, results were too heterogenous to bring any conclusions. Indeed, the number of colonies, for the 1:100 and 1:200 ratios, expected was not good enought (there is a possibility that the detector was badly digested and was consequently transformed).

Test B: Is this part able to detect specifically the target for which it has been designed ?


In order to evaluate the specificity of the detector part of BBa_K2629003, different “false target” sequences have been synthesized. An algorithm was made by iGEM Grenoble Alpes 2017 to give random sequences, more or less homologous to the original target with 5%, 15%, 25% and 50% randomly modified pairs of nucleotides (length is kept 36bp).
The algorithm can be found here :


T--grenoble-alpes--RESalgo.png

Unfortunately, we did not have the opportunity and the time to carry out these experiments.

User Reviews

UNIQ5e6a076db959bea6-partinfo-00000000-QINU UNIQ5e6a076db959bea6-partinfo-00000001-QINU