Difference between revisions of "Part:BBa K2398013"

Revision as of 20:43, 1 November 2017

p15A origin with Ampicillin resistance for application in Phage-assisted continous evolution (PACE)

This part consists of a p15A promoter and a ampicillin expression cassette, flanked by two homology regions for the usage due to the cloning standard of the iGEM Team Heidelberg 2017 (http://2017.igem.org/Team:Heidelberg/RFC). Figure one gives a short overview of our standard. Our BioBricks from the registry can easily be used for the assembly of blasmid with the standard (Fig.: 2).

Figure 1: In our cloning standard, compatible building blocks are defined by specific functionalities. They are flanked by defined homology regions, indicated by numbers, which are necessary for the assembly of the APs with the Gibson method. This results in a highly customizable plasmid, composed of the desired origin of replication, an antibiotic resistance (4-5), a bicistronic operon with geneIII (2-3)and the desired reporter (3-4), which can be activated by any promoter (1-2)and a second expression cassette for additional genes that are necessary for the respective circuit (1-5).

Figure 2: Compatibility of our cloning stadard with the RFC10;Any AP building block can be cloned into RFC[10] standard by inserting BglII sites between the homology regions and the biobrick prefix or suffix, respectively. To use such a part for AP assembly, it has to be digested with BglII. The resulting fragment should be purified and can subsequently used for Gibson assembly with other parts.

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
INCOMPATIBLE WITH RFC[21]
Illegal BglII site found at 1
Illegal BglII site found at 2160
23
COMPATIBLE WITH RFC[23]
25
INCOMPATIBLE WITH RFC[25]
Illegal AgeI site found at 185
Illegal AgeI site found at 509
1000
INCOMPATIBLE WITH RFC[1000]
Illegal BsaI.rc site found at 1214

@@ Line 3: / Line 3: @@
 <partinfo>BBa_K2398013 short</partinfo>
-TO DO
+This part consists of a p15A promoter and a ampicillin expression cassette, flanked by two homology regions for the usage due to the cloning standard of the iGEM Team Heidelberg 2017 (http://2017.igem.org/Team:Heidelberg/RFC). Figure one gives a short overview of our standard. Our BioBricks from the registry can easily be used for the assembly of blasmid with the standard (Fig.: 2).
+[[File:T--Heidelberg--Team_Heidelberg_2017_RFC_hd-1.jpeg|thumb|center|Figure 1: In our cloning standard, compatible building blocks are defined by specific functionalities. They are flanked by defined homology regions, indicated by numbers, which are necessary for the assembly of the APs with the Gibson method. This results in a highly customizable plasmid, composed of the desired origin of replication, an antibiotic resistance (4-5), a bicistronic operon with geneIII (2-3)and the desired reporter (3-4), which can be activated by any promoter (1-2)and a second expression cassette for additional genes that are necessary for the respective circuit (1-5). ]]
+[[File:T--Heidelberg--Team_Heidelberg_2017_RFC_hd.jpeg|thumb|center|Figure 2: Compatibility of our cloning stadard with the RFC10;Any AP building block can be cloned into RFC[10] standard by inserting BglII sites between the homology regions and the biobrick prefix or suffix, respectively. To use such a part for AP assembly, it has to be digested with BglII. The resulting fragment should be purified and can subsequently used for Gibson assembly with other parts.  ]]
 <!-- Add more about the biology of this part here
 ===Usage and Biology===
+The part was used for plasmid construction in combination with other parts from the iGEM Team Heidelberg part collection (http://2017.igem.org/Team:Heidelberg/Parts). It was applied in divers subprojects that can be found here: http://2017.igem.org/Team:Heidelberg/CRISPR, http://2017.igem.org/Team:Heidelberg/Cytochrome_Engineering
 <!-- -->