Difference between revisions of "Part:BBa K2289004"
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<partinfo>BBa_K2289004 short</partinfo>
 
<partinfo>BBa_K2289004 short</partinfo>
  
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This is an aptamer for saxitoxin
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This part is an Aptamer for Saxitoxin (related to the red tide), this aptamer was developed by Zheng et. al. 2015, and it was selected by a pool of aptamers developed in the same research, this aptamer has a dissociation constant (Kd) of of 0.133 µM. You can see the structure in the absence of the toxin in Figure 1, the conformation of the molecule in the presence of the toxin is still unknown.
  
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[[File:UchileBiotec2017AptamerM30f.png|thumb|200 px|center|'''Fig.1 STX M30f Aptamer.''']]
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[[File:UchileBiotec2017AptamerM30f.png|thumb|200 px|center|'''Fig.1.''' Prediction of the conformation of the Aptamer in the absence of the toxin, ublished in Zheng et. al. (2015).]]
  
 
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<partinfo>BBa_K2289004 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K2289004 SequenceAndFeatures</partinfo>
  
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==Reference==
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X. Zheng, B. Hu, SX. Gao, D.J. Liu, M.J. Sun, B.H. Jiao, L.H. Wang. (2015). A saxitoxin-binding aptamer whith higher affinity and inhibitory activity optimized by rational site-directed mutagenesis and truncation. Toxicon 101. 41-47.
  
 
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Revision as of 19:55, 1 November 2017


STX M30f Aptamer

This part is an Aptamer for Saxitoxin (related to the red tide), this aptamer was developed by Zheng et. al. 2015, and it was selected by a pool of aptamers developed in the same research, this aptamer has a dissociation constant (Kd) of of 0.133 µM. You can see the structure in the absence of the toxin in Figure 1, the conformation of the molecule in the presence of the toxin is still unknown.

Fig.1. Prediction of the conformation of the Aptamer in the absence of the toxin, ublished in Zheng et. al. (2015).

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]

Reference

X. Zheng, B. Hu, SX. Gao, D.J. Liu, M.J. Sun, B.H. Jiao, L.H. Wang. (2015). A saxitoxin-binding aptamer whith higher affinity and inhibitory activity optimized by rational site-directed mutagenesis and truncation. Toxicon 101. 41-47.