Difference between revisions of "Part:BBa K2232025"
Line 15: Line 15:
 
<partinfo>BBa_K2232025 parameters</partinfo>
 
<partinfo>BBa_K2232025 parameters</partinfo>
 
<!-- -->
 
<!-- -->
 +
===iGEM2017 SZU-China confirmed the function of BBa_K2232025.===
 +
We made characterization of this part in our chassis B.subtilis WB800.The sucrose was added in the culture medium when the value of OD<sub>600</sub> reach stationary phase initially, and the final concentration of sucrose was 20mmol/L. Then we recorded the variation of OD<sub>600</sub> by interval of 4 hours and the result is shown as follow.
 +
<div>
 +
<center><html><img src='https://static.igem.org/mediawiki/parts/thumb/8/81/Characterization_of_MazEF-suicide_switch_in_Bacillus_subtilis_strain_WB800.png/800px-Characterization_of_MazEF-suicide_switch_in_Bacillus_subtilis_strain_WB800.png'  style="width:60%;margin:0 auto" ></html></center>
 +
 +
</div>
 +
Fig. The OD<sub>600</sub> of original strain WB800 and recombinant B.subtilis WB800_MazEF recorded by interval of 4 hours.The red arrow represents the adjunction of Sucrose (20mmol/L).
 +
<div>
 +
As can be seen from the figure above, the Sucrose-limitation induced kill switch in B.subtilis didn’t show obvious function on our chassis.The reasons may be the concentration of sucrose wasn’t suitable or the degradation of ribonuclease toxin (mazF) is too fast.
 +
</div>
 +
 
===References===
 
===References===
 
Considering the biosafety in our project, we used the original part <partinfo>BBa_K302035</partinfo> from iGEM10_Newcastle team, which is a suicide switch induced by sucrose.
 
Considering the biosafety in our project, we used the original part <partinfo>BBa_K302035</partinfo> from iGEM10_Newcastle team, which is a suicide switch induced by sucrose.

Revision as of 18:56, 1 November 2017

mazEF switch

Encodes a stable non-specific ribonuclease toxin (mazF) and its inhibitory antitoxin (mazE) in Bacillus Subtilis. These genes are used in Bacillus Subtilis to provide a toxin-antitoxin kill switch in various stressful conditions. When expression of both genes is turned off (as both are under contol of same promoter) mazE will be degraded faster than mazF. There is then no inhibiton of mazF, killing the cell. Contains Sucrose sensitive inducer that will only allow coding sequence translation in the presence of sucrose. These genes are used in Bacillus subtilis to provide a toxin-antitoxin kill switch in various stressful conditions. When translation of both genes is turned off by sucrose limitation mazE will be degraded faster than mazF. There is then no inhibiton of mazF, killing the cell.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 363
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


iGEM2017 SZU-China confirmed the function of BBa_K2232025.

We made characterization of this part in our chassis B.subtilis WB800.The sucrose was added in the culture medium when the value of OD600 reach stationary phase initially, and the final concentration of sucrose was 20mmol/L. Then we recorded the variation of OD600 by interval of 4 hours and the result is shown as follow.

Fig. The OD600 of original strain WB800 and recombinant B.subtilis WB800_MazEF recorded by interval of 4 hours.The red arrow represents the adjunction of Sucrose (20mmol/L).

As can be seen from the figure above, the Sucrose-limitation induced kill switch in B.subtilis didn’t show obvious function on our chassis.The reasons may be the concentration of sucrose wasn’t suitable or the degradation of ribonuclease toxin (mazF) is too fast.

References

Considering the biosafety in our project, we used the original part BBa_K302035 from iGEM10_Newcastle team, which is a suicide switch induced by sucrose.