Difference between revisions of "Part:BBa K2505003:Design"
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===Design Notes===
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==Design Notes==
 
This gene is derived from <i>Arabidopais thaliana</i> and encode a enzyme   
 
This gene is derived from <i>Arabidopais thaliana</i> and encode a enzyme   
 
necessary for synthesizing iP (isopentenyladenine) in mammalian cells.  iP is a kind of cytokinins that are signaling molecules (Phytohormones)  in plants and play important roles in cell growth and differentiation.   
 
necessary for synthesizing iP (isopentenyladenine) in mammalian cells.  iP is a kind of cytokinins that are signaling molecules (Phytohormones)  in plants and play important roles in cell growth and differentiation.   

Revision as of 13:01, 1 November 2017


IVS-IRES-log1


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 225
    Illegal XhoI site found at 1275
    Illegal XhoI site found at 1287
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

This gene is derived from Arabidopais thaliana and encode a enzyme necessary for synthesizing iP (isopentenyladenine) in mammalian cells. iP is a kind of cytokinins that are signaling molecules (Phytohormones) in plants and play important roles in cell growth and differentiation. LOG1 has the phosphoribohydrolase activity and converts inactive cytokinin nucleotides to the biologically active free-base forms.

IVS (intervining sequence) is one kind of introns and is important for increasing the mRNA stability in eukaryotic cells. IRES (internal ribosome entry site) is an RNA element that allows translation initiation in a cap-independent mannerThe term “polyA” indicates the polyadenylation signal that is important for the nuclear export, translation, and stability of mRNA.

The DNA sequences of log1 is optimized for expressing in human cells considering the codon usage.


Source

This gene was synthesized by IDT.

References

Suzuki, T., Miwa, K., Ishikawa, K., Yamada, H., Aiba, H. and Mizuno, T. (2001) The Arabidopsis Sensor His-kinase, AHK4, Can Respond to Cytokinins. Plant Cell Physiol. 42: 107-113.

Spíchal, L., Rakova, N.Y., Riefler, M., Mizuno, T., Romanov, G.A.,Strnad, M. and Schmülling, T. (2004) Two Cytokinin Receptors of Arabidopsis thaliana, CRE1/AHK4 and AHK3, Differ in their Ligand Specifity in a Bacterial Assay. Plant Cell Physiol. 45: 1299-1305.