Difference between revisions of "Part:BBa C0178"
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==<b>Introduction</b>== | ==<b>Introduction</b>== | ||
| − | In synthetic biology, quorum sensing system (QS system) has been researched as a way of bacteria communication. A whole system always includes two parts: a generator of AHL molecules and a reporter which can receive molecules and activate the downstream genes’ expression. For ‘Las’ system, the LasI coding sequence can be translated into LasI protein, which also works as an enzyme to catalyze the reaction of substrates into Las molecule (3OC12-HSL). According to the previous parts of iGEM before 2017, a little information can be searched, thus this year we construct two devices – <b>‘Las molecule generator <bbpart>BBa_K2315033</bbpart> ’ and ‘Rpa-Las molecule converter <bbpart>BBa_K2315046</bbpart>’.</b> The first one can generate Las molecule without induction constitutively, the second one, however, can receive another QS system’s molecule – Rpa. After its induction, Las molecule can be generated, which means that this device can convert Rpa molecule into Las molecule. The mechanism of these two devices are shown below, the circuit design (.dna file) can be download in this part’s ‘design page’, the characterization of them can be found in this part’s ‘experiment page’. <b>In conclusion, we successfully achieve the goal of ‘improve the function of an existing Biobrick Part’ with LasI coding sequence in these ways: | + | In synthetic biology, quorum sensing system (QS system) has been researched as a way of bacteria communication. A whole system always includes two parts: a generator of AHL molecules and a reporter which can receive molecules and activate the downstream genes’ expression. For ‘Las’ system, the LasI coding sequence can be translated into LasI protein, which also works as an enzyme to catalyze the reaction of substrates into Las molecule (3OC12-HSL). According to the previous parts of iGEM before 2017, a little information can be searched, thus this year we construct two devices – <b>‘Las molecule generator <bbpart>BBa_K2315033</bbpart> ’</b> and <b>‘Rpa-Las molecule converter <bbpart>BBa_K2315046</bbpart>’.</b> The first one can generate Las molecule without induction constitutively, the second one, however, can receive another QS system’s molecule – Rpa. After its induction, Las molecule can be generated, which means that this device can convert Rpa molecule into Las molecule. The mechanism of these two devices are shown below, the circuit design (.dna file) can be download in this part’s ‘design page’, the characterization of them can be found in this part’s ‘experiment page’. <b>In conclusion, we successfully achieve the goal of ‘improve the function of an existing Biobrick Part’ with LasI coding sequence in these ways: |
* 1) LasI coding sequence is functional | * 1) LasI coding sequence is functional | ||
* 2) With different gene circuit design, LasI coding sequence can be generated by different inputs (constitutive promotor without inducer and pRpa promotor with Rpa molecule as inducer). Furthermore, it can be designed for complex logic circuit – converter is one of the examples. | * 2) With different gene circuit design, LasI coding sequence can be generated by different inputs (constitutive promotor without inducer and pRpa promotor with Rpa molecule as inducer). Furthermore, it can be designed for complex logic circuit – converter is one of the examples. | ||
Revision as of 01:18, 31 October 2017
autoinducer synthetase for PAI from Pseudomonas aeruginosa (no LVA)
same as C0078 except no LVA tag
I. Characterisation of LasI by Shanghaitech iGEM 2017
Group: Shanghaitech 2017
Introduction
In synthetic biology, quorum sensing system (QS system) has been researched as a way of bacteria communication. A whole system always includes two parts: a generator of AHL molecules and a reporter which can receive molecules and activate the downstream genes’ expression. For ‘Las’ system, the LasI coding sequence can be translated into LasI protein, which also works as an enzyme to catalyze the reaction of substrates into Las molecule (3OC12-HSL). According to the previous parts of iGEM before 2017, a little information can be searched, thus this year we construct two devices – ‘Las molecule generator BBa_K2315033 ’ and ‘Rpa-Las molecule converter BBa_K2315046’. The first one can generate Las molecule without induction constitutively, the second one, however, can receive another QS system’s molecule – Rpa. After its induction, Las molecule can be generated, which means that this device can convert Rpa molecule into Las molecule. The mechanism of these two devices are shown below, the circuit design (.dna file) can be download in this part’s ‘design page’, the characterization of them can be found in this part’s ‘experiment page’. In conclusion, we successfully achieve the goal of ‘improve the function of an existing Biobrick Part’ with LasI coding sequence in these ways:
- 1) LasI coding sequence is functional
- 2) With different gene circuit design, LasI coding sequence can be generated by different inputs (constitutive promotor without inducer and pRpa promotor with Rpa molecule as inducer). Furthermore, it can be designed for complex logic circuit – converter is one of the examples.
- 3) QS systems’ AHL molecules (here is Las molecule – 3OC12 HSL) generated by bacteria can be detected by HPLC and LC-MS
- 4) Las molecule has a long half-period time, it is also robust and stable in incubating mixture.
- 5) QS systems’ AHL concentration (here is Las molecule – 3OC12 HSL) can be calibrated by HPLC’s relative peak area.
- 6) LasI’s product can be calibrated by GFP’s fluorescence by plate reader and fluorescence microscope.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal AgeI site found at 223
- 1000COMPATIBLE WITH RFC[1000]