Difference between revisions of "Part:BBa K2333407"

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This part is one of a series of easy sfGFP reporter pdt parts. Series range is from <partinfo>BBa_K2333401</partinfo> to <partinfo>Bba_K2333406</partinfo>
 
This part is one of a series of easy sfGFP reporter pdt parts. Series range is from <partinfo>BBa_K2333401</partinfo> to <partinfo>Bba_K2333406</partinfo>
  
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===Usage and Biology===
 
===Usage and Biology===
Protein degradation tag A is the strongest of the 6 protein degradation tags that William and Mary 2017 characterized, and is associated with the E. Coli orthogonal protease mf-Lon (<partinfo>Bba_K2333011</partinfo>). Therefore this part would have the greatest degradation rate of the 6 protein degradation tags and it would reach steady-state fluorescence values the quickest. This part contains J23100 constitutive promoter, <partinfo>Bba_B0034 (RBS),pdt A, a double stop codon and <partinfo>Bba_B0015</partinfo> (double terminator) in the William and Mary iGEM Universal Nucleotide Sequences (UNS) format. The sfGFP reporters have been codon-optimized for E. coli and feature a double stop codon for enhanced efficiency. In order to demonstrate that protein degradation tags operated similarily regardless of the tagged protein, sfGFP reporters that were analogous to the mScarlet-I parts <partinfo>Bba_K2333413<partinfo> to <partinfo>Bba_K2333419<partinfo> were built and characterized. This demonstrates that the protein degradation tags are modular and that they have differential strengths even when they are tagged on different proteins.  
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Protein degradation tag A is the strongest of the 6 protein degradation tags that William and Mary 2017 characterized, and is associated with the E. Coli orthogonal protease mf-Lon (<partinfo>Bba_K2333011</partinfo>). Therefore this part would have the greatest degradation rate of the 6 protein degradation tags and it would reach steady-state fluorescence values the quickest. This part contains J23100 constitutive promoter, <partinfo>Bba_B0034 (RBS),pdt A, a double stop codon and <partinfo>Bba_B0015</partinfo> (double terminator) in the William and Mary iGEM Universal Nucleotide Sequences (UNS) format. The sfGFP reporters have been codon-optimized for E. coli and feature a double stop codon for enhanced efficiency. In order to demonstrate that protein degradation tags operated similarily regardless of the tagged protein, sfGFP reporters that were analogous to the mScarlet-I parts <partinfo>Bba_K2333413</partinfo> to <partinfo>Bba_K2333419</partinfo> were built and characterized. This demonstrates that the protein degradation tags are modular and that they have differential strengths even when they are tagged on different proteins.
 
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<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
 
 
<partinfo>BBa_K2333407 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K2333407 SequenceAndFeatures</partinfo>
  

Revision as of 18:38, 29 October 2017


UNS J23100 sfGFP pdt A

This part is designed to facilitate easy measurement of the strength of protein degradation tag (pdt) A by measuring time to steady-state fluorescence values of sfGFP under the control of the strong constitutive promoter J23100. William and Mary iGEM 2017 used pdts as a method to control gene expression speed.This part was utilized to characterize the degradation properties of pdt A and confirm the fact that different pdts have different degradation strengths. See [http://2017.igem.org/Team:William_and_Mary/Results William and Mary's 2017 project] for more details This part is one of a series of easy sfGFP reporter pdt parts. Series range is from BBa_K2333401 to BBa_K2333406


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 47
    Illegal NheI site found at 70
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 106