Difference between revisions of "Part:pSB3K3"

Revision as of 03:07, 28 October 2017

Low to medium copy BioBrick standard vector

pSB3K3-1 is a medium copy plasmid with kanamycin resistance. It has a p15A pMR101-derived replication origin, copy number 20-30. (Lutz and Bujard, 1997) pSB3K3-1 has a terminator upstream of its MCS, which is oriented to prevent transcription from *inside* the MCS from reading out into the vectorl. A second terminator (E.coli His operon-derived) is downstream of the MCS, again insulating the vector from transcription reading out of the MCS. Ideally, future versions of standard biobrick vectors would have terminators bracketing the MCS that were 100% efficient in terminating transcription both into and out of the MCS region.

2017 CCA_San_Diego Part Improvment

Replacement of p15A origin:

K2491030 (https://parts.igem.org/Part:BBa_K2491030)

In 2017, Philippe Hansen-Estruch from the CCA_San_Diego team created a new plasmid based off the pSB3K3 plasmid. The p15A origin of replication was replaced with a RK2 origin of replication. The goal of this improvement was to replace p15a origin of replication (ori) with the RK2 ori to generate a shuttle vector as a broad host range vector (i.e. can replicate in E.coli and other microorganisms).

The RK2 origin of replication is a broad-host-range plasmid belonging to the incP incompatibility group that can be maintained in a large number of bacteria. The minimal region for replication and maintenance consists of an origin of replication, oriV, and the plasmid replication initiator protein TrfA protein, that activates oriV. The copy number of RK2 is about 4-7 per cell in E. coli, 3 in Pseudomonas aeruginosa, and 4-7 in Agrobacterium.

Sequence and Features