Difference between revisions of "Part:BBa K2332032"

Latest revision as of 15:01, 25 October 2017

GFP-mutSpyCatcher (Lys31X, for photocaging)

This construct is the fusion of GFP with SpyCatcher with an amber stop codon (TAG) in place of the reactive Lys 31 residue (Lys31X) in SpyCatcher. This construct enables the photocaging and inactivation of SpyCatcher with the introduction of Ne-methyl-L-lysine instead of the reactive lysine required for its binding to SpyTag. SpyTag (13 amino acids) and SpyCatcher (138 amino acids, 15 kDa) are protein binding partners that originate from CnaB2 (immunoglobulin-llike collagen adhesin domain) of the FbaB protein, found in the invasive strains of S. pyogenes. For this construct to function, amberless E. coli cells also have to express pyrrolysyl tRNA (tRNA-Pyl (pylT), as well as pyrrolysyl-tRNA synthetase and the UAA, Ne-methyl-L-lysine, must be supplemented in the media. The pyrrolysyl-tRNA synthetase catalyses the acylation of the suppressor tRNACUA with the UAA. During translation, the UAG amber codon in the mRNA is recognized by the acylated tRNACUA and the UAA will be added to the growing polypeptide chain. This construct allows to directly observe through fluorescence microscopy its localization, and most importantly its co-localization with SpyTag variants pre and post photolysis. Particularly for our project, it allows us to quantify its binding onto cell surface displayed Intimin'-SpyTag and the functionality of post-translational light control.

Usage and Biology

With this construct, only upon light exposure, SpyCatcher is able to bind SpyTag and fluorescence will be observed on the cell surface of cells expressing intimin'-SpyTag. Photocaging for SpyCatcher inactivation is achieved by incorporating a photocaged unnatural amino acid (UAA), Ne-methyl-L-lysine (See figure 1), in place of the reactive lysine in SpyCatcher required for the covalent bond formation with the SpyTag aspartate residue. Upon exposure to UV light (20min, 365nm), the “cage” group in the unnatural photocaged amino acid is cleaved off revealing the native amino acid and a biologically active protein. This approach also adds a layer of bio-containment as cells will only function when externally supplied with UAA.

Figure 1: Photocaged unnatural amino acid (UAA), Ne-methyl-L-lysine

To achieve this, we introduced an amber stop codon (TAG) in place of the reactive Lys 31 residue (Lys31X) in SpyCatcher. For this construct to function, amberless E. coli cells also have to express pyrrolysyl tRNA (tRNA-Pyl (pylT), as well as pyrrolysyl-tRNA synthetase and the UAA, Ne-methyl-L-lysine, must be supplemented in the media. The pyrrolysyl-tRNA synthetase catalyses the acylation of the suppressor tRNACUA with the UAA. During translation, the UAG amber codon in the mRNA is recognized by the acylated tRNACUA and the UAA will be added to the growing polypeptide chain. The orthogonality of this system has shown to work in both E. coli and mammalian cells (see figure 2).

Figure 2: Photocaging mechanism in E. coli cells. Amberless cells must be transformed with plasmids encoding tRNA-Pyl, Pyrrolysyl-tRNA Synthetase and the target protein with an amber codon at the position where the photocaged lysine residue (Ne-methyl-L-lysine) is to be introduced. Figure adapted from Mitra N.

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
INCOMPATIBLE WITH RFC[1000]
Illegal BsaI.rc site found at 662

@@ Line 3: / Line 3: @@
 <partinfo>BBa_K2332032 short</partinfo>
-This construct is the fusion of GFP with SpyCatcher with an amber stop codon (TAG) in place of the reactive Lys 31 residue (Lys31X) in SpyCatcher. This construct enables the photocageing and inactivation of SpyCatcher with the introduction of Ne-methyl-L-lysine instead of the reactive lysine required for its binding to SpyTag. SpyTag (13 amino acids) and SpyCatcher (138 amino acids, 15 kDa) are protein binding partners that originate from CnaB2 (immunoglobulin-llike collagen adhesin domain) of the FbaB protein, found in the invasive strains of S. pyogenes. For this construct to function, amberless E. coli cells also have to express [https://parts.igem.org/Part:BBa_K1223014 pyrrolysyl tRNA (tRNA-Pyl (pylT)], as well as [https://parts.igem.org/Part:BBa_K1223013 pyrrolysyl-tRNA synthetase] and the UAA, Ne-methyl-L-lysine, must be supplemented in the media. The pyrrolysyl-tRNA synthetase catalyses the acylation of the suppressor tRNACUA with the UAA. During translation, the UAG amber codon in the mRNA is recognized by the acylated tRNACUA and the UAA will be added to the growing polypeptide chain.
+This construct is the fusion of GFP with SpyCatcher with an amber stop codon (TAG) in place of the reactive Lys 31 residue (Lys31X) in SpyCatcher. This construct enables the photocaging and inactivation of SpyCatcher with the introduction of Ne-methyl-L-lysine instead of the reactive lysine required for its binding to SpyTag. SpyTag (13 amino acids) and SpyCatcher (138 amino acids, 15 kDa) are protein binding partners that originate from CnaB2 (immunoglobulin-llike collagen adhesin domain) of the FbaB protein, found in the invasive strains of S. pyogenes. For this construct to function, amberless E. coli cells also have to express [https://parts.igem.org/Part:BBa_K1223014 pyrrolysyl tRNA (tRNA-Pyl (pylT)], as well as [https://parts.igem.org/Part:BBa_K1223013 pyrrolysyl-tRNA synthetase] and the UAA, Ne-methyl-L-lysine, must be supplemented in the media. The pyrrolysyl-tRNA synthetase catalyses the acylation of the suppressor tRNACUA with the UAA. During translation, the UAG amber codon in the mRNA is recognized by the acylated tRNACUA and the UAA will be added to the growing polypeptide chain.
 This construct allows to directly observe through fluorescence microscopy its localization, and most importantly its co-localization with SpyTag variants pre and post photolysis. Particularly for our project,  it allows us to quantify its binding onto cell surface displayed Intimin'-SpyTag and the functionality of post-translational light control.
@@ Line 9: / Line 9: @@
 ===Usage and Biology===
-With this construct, only upon light exposure, SpyCatcher is able to bind SpyTag and fluorescence will be observed on the cell surface of cells expressing intimin'-SpyTag. Photocageing for SpyCatcher inactivation is achieved by incorporating a photocaged unnatural amino acid (UAA), Ne-methyl-L-lysine (See figure 1), in place of the reactive lysine in SpyCatcher required for the covalent bond formation with the SpyTag aspartate residue. Upon exposure to UV light (20min, 365nm), the “cage” group in the unnatural photocaged amino acid is cleaved off revealing the native amino acid and a biologically active protein. This approach also adds a layer of bio-containment as cells will only function when externally supplied with UAA.
+With this construct, only upon light exposure, SpyCatcher is able to bind SpyTag and fluorescence will be observed on the cell surface of cells expressing intimin'-SpyTag. Photocaging for SpyCatcher inactivation is achieved by incorporating a photocaged unnatural amino acid (UAA), Ne-methyl-L-lysine (See figure 1), in place of the reactive lysine in SpyCatcher required for the covalent bond formation with the SpyTag aspartate residue. Upon exposure to UV light (20min, 365nm), the “cage” group in the unnatural photocaged amino acid is cleaved off revealing the native amino acid and a biologically active protein. This approach also adds a layer of bio-containment as cells will only function when externally supplied with UAA.
 [[File:photocaged-lysine.png|thumb|center|500px| Figure 1: Photocaged unnatural amino acid (UAA), Ne-methyl-L-lysine]]
@@ Line 15: / Line 15: @@
 To achieve this, we introduced an amber stop codon (TAG) in place of the reactive Lys 31 residue (Lys31X) in SpyCatcher. For this construct to function, amberless E. coli cells also have to express [https://parts.igem.org/Part:BBa_K2332003 pyrrolysyl tRNA (tRNA-Pyl (pylT)], as well as [https://parts.igem.org/Part:BBa_K1223013 pyrrolysyl-tRNA synthetase] and the UAA, Ne-methyl-L-lysine, must be supplemented in the media. The pyrrolysyl-tRNA synthetase catalyses the acylation of the suppressor tRNACUA with the UAA. During translation, the UAG amber codon in the mRNA is recognized by the acylated tRNACUA and the UAA will be added to the growing polypeptide chain. The orthogonality of this system has shown to work in both E. coli and mammalian cells (see figure 2).
-[[File:Photocageing-mechanism.png|thumb|center|500px| Figure 2: Photocageing mechanism in E. coli cells. Amberless cells must be transformed with plasmids encoding tRNA-Pyl, Pyrrolysyl-tRNA Synthetase and the target protein with an amber codon at the position where the photocaged lysine residue (Ne-methyl-L-lysine) is to be introduced. Figure adapted from [https://www.labome.com/method/Incorporating-Unnatural-Amino-Acids-into-Recombinant-Proteins-in-Living-Cells.html Mitra N.]]]
+[[File:Photocageing-mechanism.png|thumb|center|500px| Figure 2: Photocaging mechanism in E. coli cells. Amberless cells must be transformed with plasmids encoding tRNA-Pyl, Pyrrolysyl-tRNA Synthetase and the target protein with an amber codon at the position where the photocaged lysine residue (Ne-methyl-L-lysine) is to be introduced. Figure adapted from [https://www.labome.com/method/Incorporating-Unnatural-Amino-Acids-into-Recombinant-Proteins-in-Living-Cells.html Mitra N.]]]
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