Difference between revisions of "Part:BBa K2273034"

Revision as of 16:55, 19 October 2017

Brief introduction in Fluorescent Proteins

Still in Progress: Fluorescent proteins (FPs) are small proteins with barrel-fold topology. A unique chromophore of FPs, which originated from three intrinsic amino acids in positions 65–67, is tightly encapsulated inside the barrel and does not require any cofactors or enzymatic systems to be formed, except for molecular oxygen. The rigid β-barrel shell of FPs performs important functions, protecting a protein chromophore from any environmental factors and from radiationless deactivation while it restricts chromophore flexibility. The correct folding of the protein matrix is strongly obligated for chromophore maturation because it results in proper orientation of the amino acids that catalyze chromophore synthesis. Protein folding provides a bend in the central α-helix that bears the chromophore-forming tripeptide, which is required for chromophore synthesis.

Overview of sfGFP

A mutant of the wild-type green fluorescent protein (GFP) from Aequorea victoria, super folder GFP (sfGFP). sfGFP is a novel and robust variant designed for in vivo high-throughput screening of protein expression levels. sfGFP shows increased thermal stability and is able to tolerate genetic fusion to poorly folding proteins while remaining fluorescent. It incorporates the red shift S65T mutation and the folding mutation F64L and six additional mutations which improve its folding: S30R, Y39N, N105T, Y145F, I171V and A206V. (Cotlet et. al 2006)

Modularization: Overview

In our terminology the term “RepVP123” encompasses the whole AAV2 genome excluding the ITRs. The rep locus comprises four proteins related to genome replication while the cap locus codes for the proteins VP1, VP2, VP3 and the assembly-associated protein (AAP), which are required for viral capsid assembly. Source of the RepVP123 BioBrick supplied within iGEM team Freiburg_Bioware 2010 Virus Construction Kit is the wild-type AAV2 RepVP123, as provided e. g. in the pAAV vector from Stratagene. In order to introduce the iGEM standard and additionally enabling the possibility to modify the viral capsid via integration of certain motives within the viral loops 453 and 587, a total of twelve mutations within RepVP123 (see Figure 1) and additionally two mutations within the pSB1C3 backbone were introduced by either Site-Directed Mutagenesis (SDM) or by ordering and cloning of specifically designed gene sequences matching the required demands. Modifying the pSB1C3 led to iGEM team Freiburg_Bioware’s variant of this backbone, pSB1C3_001.