Difference between revisions of "Part:BBa K2145001"

Latest revision as of 23:19, 30 October 2016

GFP/RFP reporter (Reverse/Forward) with random 500bp spacer

This part contains two fluorescent protein expression units (for RFP and GFP) with promoters, RBSs, CDSs, and terminators, GFP facing backward and RFP facing forward, with a random 500bp spacer between the two reporters. Parts were amplified from iGEM Registry (BBa_J04450 (RFP) and BBa_I13522 (GFP)) and assembled with golden gate assembly to make the full part. This composite part is designed to demonstrate the effect, if any, of a 500 bp spacer between genes on supercoiling generated by the two genes, and therefore on interference between the genes.

This part is one of an 8-plasmid set (K2145000, K2145001, K2145104, K2145105, K2145124, K2145107, K2145126, and K2145127). Other plasmids in this set are similar, but have GFP and RFP expression cassettes pointing in different directions and in different arrangements on the plasmid. Different arrangement and orientations are expected to generate different patterns of supercoiling, which translates to different patterns of expression in RFP and GFP if supercoiling creates interference between the two.

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
INCOMPATIBLE WITH RFC[25]
Illegal AgeI site found at 2270
Illegal AgeI site found at 2382
1000
COMPATIBLE WITH RFC[1000]

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 <partinfo>BBa_K2145001 short</partinfo>
-This part contains two fluorescent protein coding sites (for RFP and GFP) and was assembled using Golden Gate Assembly. To make plasmid, parts were taken from iGEM Registry (BBa_J04450 (RFP) and BBa_I13522 (GFP)) along with a "spacer" part and pSB1C3 backbone assembled to make the final part. It can be used to express both GFP and RFP proteins.
+This part contains two fluorescent protein expression units (for RFP and GFP) with promoters, RBSs, CDSs, and terminators, GFP facing backward and RFP facing forward, with a random 500bp spacer between the two reporters. Parts were amplified from iGEM Registry (BBa_J04450 (RFP) and BBa_I13522 (GFP)) and assembled with golden gate assembly to make the full part. This composite part is designed to demonstrate the effect, if any, of a 500 bp spacer between genes on supercoiling generated by the two genes, and therefore on interference between the genes.
-Direction of GFP: Forward, toward the spacer; Direction of RFP: Forward, away from the spacer
+This part is one of an 8-plasmid set (K2145000, K2145001, K2145104, K2145105, K2145124, K2145107, K2145126, and K2145127). Other plasmids in this set are similar, but have GFP and RFP expression cassettes pointing in different directions and in different arrangements on the plasmid. Different arrangement and orientations are expected to generate different patterns of supercoiling, which translates to different patterns of expression in RFP and GFP if supercoiling creates interference between the two.
 <!-- Add more about the biology of this part here