Difference between revisions of "Part:BBa K2042006"

Revision as of 23:26, 29 October 2016

Cyclohexanone inducible promoter

This is a sequence for a cyclohexanone inductible promoter. This is a promoter specially adapted for the use in gram negative bacteria [1], and Pseudomonas putida is a very good candidate because it is able to thrive in environments containing haloalkanes and other cyclic carbon compounds[2].

This promoter is based on elements of the cyclohexanol biodegradation pathway of Acinetobacter johnsonii edited in silico to obtain a standardized SEVA (Standard European Vector Architecture) expression cargo [3], and assembled to conceive the pSEVA2311 plasmid. It was edited and formatted from ChnR/PchnB regulatory node of Acinetobacter johnsonii to ease the targeted engineering of ectopic gene expression in Gram-negative bacteria. The system was assembled in a minimal DNA segment adopting a Synthetic Biology standard.

Transcriptional activation of the ChnR/PchnB expression system upon addition of cyclohexanone was evaluated in a wild-type Escherichia coli strain. The expression data presented reflect a tightly controlled transcription initiation signal in response to cyclohexanone. Key features of this expression vector include a very low expression level in the absence of inducer, high transcriptional capacity, an induction kinetics very similar in both minimal and rich culture media, and linear accumulation of the reporter product along time

According to the literature a concentrations of inducer (i.e. cyclohexanone) of 1 mM is suitable for gene expression in gram negative bacteria [1].

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
COMPATIBLE WITH RFC[1000]

[1] Benedetti, Ilaria, Pablo I. Nikel, and Víctor de Lorenzo. "Data on the standardization of a cyclohexanone-responsive expression system for Gram-negative bacteria." Data in brief 6 (2016): 738-744. [2] Benedetti, Ilaria, Víctor de Lorenzo, and Pablo I. Nikel. "Genetic programming of catalytic Pseudomonas putida biofilms for boosting biodegradation of haloalkanes." Metabolic engineering 33 (2016): 109-118. [3] Kim, Se Hyeuk, et al. "SEVA linkers: a versatile and automatable DNA backbone exchange standard for synthetic biology." ACS synthetic biology (2016).

@@ Line 3: / Line 3: @@
 <partinfo>BBa_K2042006 short</partinfo>
-This is a sequence for a cyclohexanone inductible promoter. This is a promoter specially adapted for the use in gram negative bacteria [1], and Pseudomonas putida is a very good candidate because it is able to thrive in environments containing haloalkanes and other cyclic carbon compounds.
+This is a sequence for a cyclohexanone inductible promoter. This is a promoter specially adapted for the use in gram negative bacteria [1], and Pseudomonas putida is a very good candidate because it is able to thrive in environments containing haloalkanes and other cyclic carbon compounds[2].
-This promoter is based on elements of the cyclohexanol biodegradation pathway of Acinetobacter johnsonii edited in silico to obtain a standardized SEVA (Standard European Vector Architecture) expression cargo, and assembled to conceive the pSEVA2311 plasmid.
+This promoter is based on elements of the cyclohexanol biodegradation pathway of Acinetobacter johnsonii edited in silico to obtain a standardized SEVA (Standard European Vector Architecture) expression cargo [3], and assembled to conceive the pSEVA2311 plasmid.
 It was edited and formatted from ChnR/PchnB regulatory node of Acinetobacter johnsonii to ease the targeted engineering of ectopic gene expression in Gram-negative bacteria. The system was assembled in a minimal DNA segment adopting a Synthetic Biology standard.
@@ Line 29: / Line 29: @@
 [1] Benedetti, Ilaria, Pablo I. Nikel, and Víctor de Lorenzo. "Data on the standardization of a cyclohexanone-responsive expression system for Gram-negative bacteria." Data in brief 6 (2016): 738-744.
+[2] Benedetti, Ilaria, Víctor de Lorenzo, and Pablo I. Nikel. "Genetic programming of catalytic Pseudomonas putida biofilms for boosting biodegradation of haloalkanes." Metabolic engineering 33 (2016): 109-118.
+[3] Kim, Se Hyeuk, et al. "SEVA linkers: a versatile and automatable DNA backbone exchange standard for synthetic biology." ACS synthetic biology (2016).