Difference between revisions of "Part:BBa K2043015"

Line 3: Line 3:
 
<partinfo>BBa_K2043015 short</partinfo>
 
<partinfo>BBa_K2043015 short</partinfo>
  
GFP-FBD8
 
  
<!-- Add more about the biology of this part here
+
In the context of Paris Bettencourt 2016 iGEM project, Frank&Stain, we looked for fabric binding domains with phage display in order to optimise our enzymes on the topic of pigment degradation. More information can be consulted in the wiki, but we wanted to degrade wine stains, and we developed the FBD in order to direct the enzymatic activity to the fabric. <br><br>
===Usage and Biology===
+
 
 +
We fused the GFP gene with the FBD8 (in the N-terminal of the GFP) in order to understand two things: (i)if the GFP fluorescence would be affect by the binding of the FBD and (ii)if the binding capacity would be affected. <br><br>
 +
 
  
 
<!-- -->
 
<!-- -->
Line 21: Line 22:
 
<h1>GFP-FBD8</h1>
 
<h1>GFP-FBD8</h1>
  
<pre>
+
Jain, P., Soshee, A., Narayanan, S. S., Sharma, J., Girard, C., Dujardin, E., & Nizak, C. (2014). Selection of arginine-rich anti-gold antibodies engineered for plasmonic colloid self-assembly. The Journal of Physical Chemistry C, 118(26), 14502-14510.<br><br>
 +
 
 +
Soshee, A., Zürcher, S., Spencer, N. D., Halperin, A., & Nizak, C. (2013). General in vitro method to analyze the interactions of synthetic polymers with human antibody repertoires. Biomacromolecules, 15(1), 113-121.<br><br>
  
                                                                      xmHTTTTT%ms.                      
+
Boyer, S., Biswas, D., Soshee, A. K., Scaramozzino, N., Nizak, C., & Rivoire, O. (2016). Hierarchy and extremes in selections from pools of randomized proteins. Proceedings of the National Academy of Sciences, 201517813.<br><br>
                                                                    z?!!!!!!!!!!!!!!?m                   
+
                                                                  z!!!!!!!!!!!!!!!!!!!!%                 
+
                                                              eHT!!!!!!!!!!!!!!!!!!!!!!!L               
+
                                                              M!!!!!!!!!!!!!!!!!!!!!!!!!!!>             
+
                                                          z!!!!!!!!!!XH!!!!!!!!!!!!!!!!!!X             
+
                                                          "$$F*tX!!W?!!!!!!!!!!!!!!!!!!!!!             
+
                                                          >    M!!!  4$$NX!!!!!!!!!!!!!t             
+
                                                          tmem?!!!!?    ""  "X!!!!!!!!!!F             
+
                                                      um@T!!!!!!!!!!!!s.     M!!!!!!!!!!F               
+
                                                  .#!!!!!!!!!!!!!!!XX!!!!?mM!!!!!!!!!!t~               
+
                                                  M!!!@!!!!X!!!!!!!!!!*U!!!!!!!!!!!!!!@                 
+
                                                M!!t%!!!W?!!!XX!!!!!!!!!!!!!!!!!!!!X"                   
+
                                                :!!t?!!!@!!!!W?!!!!XWWUX!!!!!!!!!!!t                     
+
                                                4!!$!!!M!!!!8!!!!!@$$$$$$NX!!!!!!!!-                     
+
                                                *P*!!!$!!!!E!!!!9$$$$$$$$%!!!!!!!K                      
+
                                                    "H*"X!!X&!!!!R**$$$*#!!!!!!!!!>                     
+
                                                        'TT!?W!!9!!!!!!!!!!!!!!!!M                       
+
                                                        '!!!!!!!!!!!!!!!!!!!!!!!!F                       
+
                                                        '!!!!!!!!!!!!!!!!!!!!!!!!>                       
+
                                                        '!!!!!!!!!!!!!!!!!!!!!!!M                       
+
                                                        J!!!!!!!!!!!!!!!!!!!!!!!F K!%n.                  
+
        @!!!!!??m.                                  x?F'X!!!!!!!!!!!!!!!!!!!!HP X!!!!!!?m.             
+
Z?L      '%!!!!!!!!!?s                            .@!\~ MB!!!!!!!!!!!!!!!!!U#!F X!!!!!!!!X#!%.           
+
E!!N!k    't!!!!!!!!!?:                      zTX?!t~ M!t!!!!!!!!!!!!!!UM!!!F 4!!!!!!!!t%!!!!?.        
+
!!!!!!hzh.   "X!!!!!!!!!>                  .+?!!3?!X  Z!!!B!!!!!!!!!!UM!!!!!" 4!!!!!!!!t?!!!!!!!h       
+
?!!!!!!!!!*!?L %!!!!!!!!?              .+?!!!!3!!\  P!!!!?X!!!!!!U#!!!!!!X" 4!!!!!!!!\%!!!!!!!!!?       
+
'X!!!!!!!!!!!!?TTTT*U!!!!k            z?!!!!!!t!!!- J!!!!!!9!!X@T!!!!!!!!X~ d!!!!!!!!!%!!!!!!!!!!!!L     
+
4!!!!!!!!!!!!!!!!!!!!!!!M          'W!!!!!!!X%!!P  %!!!!!!!T!!!!!!!!!!!X~ J!!!!!!!!!P!!!!!!!!!!!!!!\   
+
  5!!!!!!!!!!!!!!!!!!!!!!!?m.      .@Ti!!!!!Z!!t  d!!!!!!!!!!!!!!!!!!!X-.JUUUUX!!!!J!!!!!!!!!!!!!!!!!   
+
  %!!!!!!!!!!!!!!!!!!!!!!!!!!!TnzT!!!!!#/!!?!!X"  ^"=4UU!!!!!!!!!!U@T!!!!!!!!!!!!Th2!!!!!!!!!!!!!!!!!! 
+
    ^t!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!?K!K!!f              `""#X!!!!!!!!!!!!!!!!!?t!!!!!!!!!!!!!!!!(>
+
      "U!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!$!!F                      "tX!!!!!!!!!!!!!!!!b!!!!!!!!!!!!!!!(>
+
          '"*tUUX!X!!!!!!!!!!!!!!!!!!!!!!!!$!Z                          ^4!!!!!!!!!!!!!!!N!!!!!!!!!!!!!!!!
+
                %!!!!!!!!!!!!!!!!!!!!!!!!X!X                              %W@@WX!!!!!!!!!N!!!!!!!!!!!!!!!
+
                  "X!!!!!!!!!!!!!!!!!!!!!@!!*        ..   ..  :m.. ETThmuM!!!!!!!!!!!!!!!!@m@*TTTT?!!!W!!
+
                    %!!!!!!!!!!!!!!!!!!W?!!X        M!!!TT?!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!9UU!!!!!!!!!M!f
+
                    't!!!!!!!!!!!!!!!P!!!!X          5!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!?NX!!!!!!L
+
                      "W!!!!!!!!!!!X#!!!!!R          "X!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!R!!!!!t
+
                        ^*X!!!!!!!t%!!!!!h              %X!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!>
+
                            "*U!!M!!!!!!X~ :?!!!T!+s...  *X!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+
                                :?!!!!!!> :?!!!!!!!!!!!!!!!!?tX!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!>
+
                                %!!!!!!F .%!!!!!!!!!!!!!!!!!!!!!#4U!!!!!!!!!!!!U!!!!!!!!!!!!!!!!!!!!!!!!~
+
                                K!!!!!!Z  K!!!!!!!!!!!!!!!!!!!!!!!  F!!!!!?!!?X!!!!!!!!!!!!!!!!!!!!!!!!!Z
+
                              X!!!!!!t  H!!!!!!!!!!!!!!!!!!!!!!!!> !!!!!!!!!!!W!!!!!!!!!!!!!!!!!!!!!!!t 
+
                              %!!!!!!F :!!!!!!!!!!!!!!!!!!!!!!!!!> !!!!!!!!!!!!#X!!!!!!!!!!!!!!!!!!!!X 
+
                              '!!!!!!X  K!!!!!!!!!!!!!!!!!!!!!!!!!> K!!!!!!!!!!!!!?W!!!!!!!!!!!!!!!!X" 
+
</pre>
+

Revision as of 11:24, 24 October 2016


GFP-FBD8


In the context of Paris Bettencourt 2016 iGEM project, Frank&Stain, we looked for fabric binding domains with phage display in order to optimise our enzymes on the topic of pigment degradation. More information can be consulted in the wiki, but we wanted to degrade wine stains, and we developed the FBD in order to direct the enzymatic activity to the fabric.

We fused the GFP gene with the FBD8 (in the N-terminal of the GFP) in order to understand two things: (i)if the GFP fluorescence would be affect by the binding of the FBD and (ii)if the binding capacity would be affected.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]



GFP-FBD8

Jain, P., Soshee, A., Narayanan, S. S., Sharma, J., Girard, C., Dujardin, E., & Nizak, C. (2014). Selection of arginine-rich anti-gold antibodies engineered for plasmonic colloid self-assembly. The Journal of Physical Chemistry C, 118(26), 14502-14510.

Soshee, A., Zürcher, S., Spencer, N. D., Halperin, A., & Nizak, C. (2013). General in vitro method to analyze the interactions of synthetic polymers with human antibody repertoires. Biomacromolecules, 15(1), 113-121.

Boyer, S., Biswas, D., Soshee, A. K., Scaramozzino, N., Nizak, C., & Rivoire, O. (2016). Hierarchy and extremes in selections from pools of randomized proteins. Proceedings of the National Academy of Sciences, 201517813.