Difference between revisions of "Part:BBa K523015:Experience"

Revision as of 23:36, 20 October 2016

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Applications of BBa_K523015

TecCEM_HS 2016 The TecCEM_HS decided to further work with the part BBa_K523015, which was characterized via a DNS assay. It consists of Lac promoter RBS and endoglucanase from C. Fimi. Optimum temperature was determined.

Two liters of DNS were prepared with 20 g of NaOH, 4 g of phenol, 1 g of sodium sulfite, 400 g of potassium sodium tartrate and 20 g of DNS. Carboxymethylcellulose (CMC) was used as substrate and all assays were realized with CMC 2% in PBS pH 7. All assays, including the standard curve were done triplicate.

A standard curve of glucose was realized ranging from 0.1 to 2 mM from a 10 mM stock and diluted with PBS pH 7. In order to reveal the reaction DNS was added and absorbance at 540 nm was determined. Finally data was analyzed in a spreadsheet, plotted obtaining an equation (y=0.8709x-0.1124) with a correlation factor equal to 0.9285

Figure 1 Standard Glucose-DNS Curve.

The biobrick was transformed in E. coli strain BL21 in order to express the enzyme endoglucanase, and positive clones were selected by antibiotic resistance. As reported before in literature, endoglucanese is an extracellular enzyme but in order to have more activity, lysis of cells is recommended. Positive clones were further grown overnight in LB liquid media with proper antibiotic (chloramphenicol-CAM) concentration. The first step consisted on centrifugation at 10,000 g for 15 minutes to eliminate growth medium, after resuspension in 10 mL of miliQ water, lysis of cells was achieved with an homogenizer “Polytron PT2100”, finally another centrifugation to collect all non soluble parts of cells and supernatant was used.

The assays were incubated at 20 °C, 25°C, 30°C, 35°C, 37°C and 40°C, based on literature. In a microtube 300 μL of CMC 2% was added, followed by 150 μL of supernatant of lysis and the mix was incubated 30 minutes at selected temperature. To stop and reveal the reaction 600 μL of DNS were added and absorbance at 540 nm was determined. In order to obtain the optimum temperature the average of each temperature was transformed to concentration of glucose hydrolyzed with the standard curve, furthermore μmol of substrate hydrolyzed was obtained by multiplying the concentration of glucose and the volume of substrate added. At last, activity was calculated dividing μmol of substrate between time of assay. Results are shown in table and plotted as a function of temperature. As seen in the graphic of temperature against activity, 30 °C and 37°C can be concluded as the optimal temperatures due to a higher activity but in table it can be discerned that 30°C presented higher activity.

Temperature	Absorbance average	μmol of substrate	Activity (UI)
20 °C	0.029	0.0489	0.00163
25 °C	0.069	0.0624	0.00208
30 °C	0.174	0.0988	0.00329
35 °C	0.060	0.0596	0.00198
37 °C	0.082	0.0671	0.00223
40 °C	0.171	0.0978	0.00326

User Reviews

UNIQ23ad4f00ae2f7f49-partinfo-00000000-QINU UNIQ23ad4f00ae2f7f49-partinfo-00000001-QINU

@@ Line 15: / Line 15: @@
 https://static.igem.org/mediawiki/2016/e/e2/TecCEMHS_StandardCurveDNS.png
-Figure 1. Standard Glucose-DNS Curve.
+''Figure 1'' Standard Glucose-DNS Curve.
 The biobrick was transformed in E. coli strain BL21 in order to express the enzyme endoglucanase, and positive clones were selected by antibiotic resistance. As reported before in literature, endoglucanese is an extracellular enzyme but in order to have more activity, lysis of cells is recommended. Positive clones were further grown overnight in LB liquid media with proper antibiotic (chloramphenicol-CAM) concentration. The first step consisted on centrifugation at 10,000 g for 15 minutes to eliminate growth medium, after resuspension in 10 mL of miliQ water, lysis of cells was achieved with an homogenizer “Polytron PT2100”, finally another centrifugation to collect all non soluble parts of cells and supernatant was used.