Difference between revisions of "Part:BBa K1991003"

 
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There are two Alcohol oxidase (AOX) genes, AOX1 (CAY72092.1) and AOX2 (CAY71377.1), on chromosome 4 in Pichia pastoris. AOX was utilized to provide carbon source and energy for the methylotrophic yeast by metabolizing primary alcohol like methanol.
 
There are two Alcohol oxidase (AOX) genes, AOX1 (CAY72092.1) and AOX2 (CAY71377.1), on chromosome 4 in Pichia pastoris. AOX was utilized to provide carbon source and energy for the methylotrophic yeast by metabolizing primary alcohol like methanol.
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<div class="procontent">
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    <p>To analyze the AOX gene expression, we run on a SDS-PAGE gel and observed by Coomassie Blue staining. The overnight-cultured E. coli were centrifuged and lysed with <a href="http://openwetware.org/wiki/Endy:E._coli_Western_Blot">Lysis Buffer</a> (12.5 mM Tris pH 6.8, 4% SDS). The resulting lysates were subjected to SDS-PAGE with a 10% polyacrylamide gel. The gel was stained with 0.25% Coomassie Brilliant Blue R250 for 2 hours and destained until the protein bands were clear. As the data showed in Figure 2, LO protein was expressed at around the estimated molecular weight of 17 kDa, LO-AOX fusion protein at 91 kDa and AOX protein at 79 kDa. The protein expression level was consistent with the data of GFP in Figure 1, demonstrating the low gene expression level of a LO fusion protein. However, so far we cannot confirm whether LO fusion protein is able to direct AOX or GFP proteins displayed on the cell surface of E. coli. We’re planning to do a subcellular fractionation to separate the outer membrane proteins for analysis in the future.</p>
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      <div class="propic5">
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        <div class="promd"><img src="https://static.igem.org/mediawiki/2016/5/55/T--Mingdao--Proof2.jpg" width="341" height="300" /></div>
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          <p>Figure 2: AOX protein analysis. SDS-PAG and Coomassie Blue staining were used to observe protein expression level. Lane 1: wild-type E. coli as a mock control; Lane 2: LO outer membrane protein [<a href="https://parts.igem.org/Part:BBa_K1991007">BBa_K1991007</a>] (17 kDa) expression in E. coli; Lane 3: LO-AOX fusion protein [<a href="https://parts.igem.org/Part:BBa_K1991009">BBa_K1991009</a>] (91 kDa) expression in E. coli.; Lane 4: AOX protein [<a href="https://parts.igem.org/Part:BBa_K1991003">BBa_K1991003</a>] (79 kDa) expression in E. coli.</p>
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Revision as of 15:08, 19 October 2016


Pcons-RBS-AOX2

There are two Alcohol oxidase (AOX) genes, AOX1 (CAY72092.1) and AOX2 (CAY71377.1), on chromosome 4 in Pichia pastoris. AOX was utilized to provide carbon source and energy for the methylotrophic yeast by metabolizing primary alcohol like methanol.


To analyze the AOX gene expression, we run on a SDS-PAGE gel and observed by Coomassie Blue staining. The overnight-cultured E. coli were centrifuged and lysed with <a href="http://openwetware.org/wiki/Endy:E._coli_Western_Blot">Lysis Buffer</a> (12.5 mM Tris pH 6.8, 4% SDS). The resulting lysates were subjected to SDS-PAGE with a 10% polyacrylamide gel. The gel was stained with 0.25% Coomassie Brilliant Blue R250 for 2 hours and destained until the protein bands were clear. As the data showed in Figure 2, LO protein was expressed at around the estimated molecular weight of 17 kDa, LO-AOX fusion protein at 91 kDa and AOX protein at 79 kDa. The protein expression level was consistent with the data of GFP in Figure 1, demonstrating the low gene expression level of a LO fusion protein. However, so far we cannot confirm whether LO fusion protein is able to direct AOX or GFP proteins displayed on the cell surface of E. coli. We’re planning to do a subcellular fractionation to separate the outer membrane proteins for analysis in the future.

<img src="T--Mingdao--Proof2.jpg" width="341" height="300" />

Figure 2: AOX protein analysis. SDS-PAG and Coomassie Blue staining were used to observe protein expression level. Lane 1: wild-type E. coli as a mock control; Lane 2: LO outer membrane protein [<a href="https://parts.igem.org/Part:BBa_K1991007">BBa_K1991007</a>] (17 kDa) expression in E. coli; Lane 3: LO-AOX fusion protein [<a href="https://parts.igem.org/Part:BBa_K1991009">BBa_K1991009</a>] (91 kDa) expression in E. coli.; Lane 4: AOX protein [<a href="https://parts.igem.org/Part:BBa_K1991003">BBa_K1991003</a>] (79 kDa) expression in E. coli.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]