Difference between revisions of "Part:BBa K1985001"
JJECornish (Talk | contribs) |
JJECornish (Talk | contribs) (→Validation) |
||
| Line 27: | Line 27: | ||
The part was first validated with a diagnostic restriction digest using EcoRI and PstI and agarose gel electrophoresis. The expected band sizes from the digest were: 2029 for the plasmid backbone and 583 for the insert. A 1kB plus DNA marker was used to verify the sizes of the bands and it was confirmed that the correct plasmid had been produced. | The part was first validated with a diagnostic restriction digest using EcoRI and PstI and agarose gel electrophoresis. The expected band sizes from the digest were: 2029 for the plasmid backbone and 583 for the insert. A 1kB plus DNA marker was used to verify the sizes of the bands and it was confirmed that the correct plasmid had been produced. | ||
| − | [[File:PSB1C3-MamT gel.jpeg|400px|thumb|centre|Figure 2. Agarose gel of the restriction digest of BBa_K1985001 in | + | [[File:PSB1C3-MamT gel.jpeg|400px|thumb|centre|Figure 2. Agarose gel of the restriction digest of BBa_K1985001 in pSB1C3, with EcoRI and PstI.]] |
Revision as of 10:36, 17 October 2016
mamT
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 117
- 1000COMPATIBLE WITH RFC[1000]
Usage and Biology
Usage: The mamT gene produces a protein that can be used to transfer electrons to iron molecules. It can be used in combination with other mam genes to form an electron transport complex (reference) that should form magnetic magnetite crystals when the cell is exposed to iron in solution. It was to assemble a construct of MamO, P, T and X in pSB1A3 for in vivo expression. Biology: MamT is a proposed cytochrome protein (reference) due to the presence of a heme binding motif within its sequence. It forms a complex with other Mam proteins on the membrane of the native species, Magnetospirillum gryphiswaldense. Together they promote magnetite crystal maturation within an organelle called the magnetosome.
Validation
The part was first validated with a diagnostic restriction digest using EcoRI and PstI and agarose gel electrophoresis. The expected band sizes from the digest were: 2029 for the plasmid backbone and 583 for the insert. A 1kB plus DNA marker was used to verify the sizes of the bands and it was confirmed that the correct plasmid had been produced.
