Difference between revisions of "Part:BBa K2116011"
Line 1: Line 1:
  
 
__NOTOC__
 
__NOTOC__
−
<partinfo>BBa_K2116011 short</partinfo>
+
<partinfo>BBa_K2116015 short</partinfo>
  
 
Promoter norV '''(PnorV)''' is the native promoter controlling the nitric oxide reduction operon (norRVW) in ''E. Coli''. [1] It's transcriptional regulator, NorR, can sense nitric oxide and activate gene expression.  
 
Promoter norV '''(PnorV)''' is the native promoter controlling the nitric oxide reduction operon (norRVW) in ''E. Coli''. [1] It's transcriptional regulator, NorR, can sense nitric oxide and activate gene expression.  
Line 13: Line 13:
 
[[File:Bba K2116011 AND gatebehaviour.png|500px|thumb|center|The AND gate was tested in presence of DETA/NO and 3OC6HSL. Activation was quantified through GFP expression. The AND gate '''works as expected''', reaching maximal expression only when both NO and AHL are present at the highest concentration tested.]]
 
[[File:Bba K2116011 AND gatebehaviour.png|500px|thumb|center|The AND gate was tested in presence of DETA/NO and 3OC6HSL. Activation was quantified through GFP expression. The AND gate '''works as expected''', reaching maximal expression only when both NO and AHL are present at the highest concentration tested.]]
  
−
In order to ascertain that we are using the native NorR and not another transcriptional regulator, we used a Keio norR knock out strain (norR KO) and compared it to it's parent wild type strain (WT). In this case only PnorV was tested, which can also be found on the registry [[BBa_K2116002]]. It was shown that PnorV can be activated by DETA/NO in the parent strain, but not in the norR KO strain.  
+
In order to ascertain that we are using the native NorR and not another transcriptional regulator, we used a Keio norR knock out strain (norR KO) and compared it to it's parent wild type strain (WT). In this case only PnorV was tested, which can also be found on the registry [[Part:BBa_K2116002]]. It was shown that PnorV can be activated by DETA/NO in the parent strain, but not in the norR KO strain.  
  
 
[[File:PnorV native norR functionality.png|500px|thumb|center|A norR KO strain was used as a negative control to demonstrate that the native norR of ''E.coli'' can activate PnorV in the AND gate.]]
 
[[File:PnorV native norR functionality.png|500px|thumb|center|A norR KO strain was used as a negative control to demonstrate that the native norR of ''E.coli'' can activate PnorV in the AND gate.]]
Line 28: Line 28:
 
<!-- -->
 
<!-- -->
 
<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
−
<partinfo>BBa_K2116011 SequenceAndFeatures</partinfo>
+
<partinfo>BBa_K2116015 SequenceAndFeatures</partinfo>
  
  
 
<!-- Uncomment this to enable Functional Parameter display  
 
<!-- Uncomment this to enable Functional Parameter display  
 
===Functional Parameters===
 
===Functional Parameters===
−
<partinfo>BBa_K2116011 parameters</partinfo>
+
<partinfo>BBa_K2116015 parameters</partinfo>
 
<!-- -->
 
<!-- -->

Revision as of 22:37, 16 October 2016


PnorV_esabox_(15bp)spacer_esabox_spacer_esabox (p30)

Promoter norV (PnorV) is the native promoter controlling the nitric oxide reduction operon (norRVW) in E. Coli. [1] It's transcriptional regulator, NorR, can sense nitric oxide and activate gene expression.

EsaR is a transcriptional regulator of the P. stewartii quorum sensing system. Unlike other quorum sensing regulators, it acts as a repressor and not an activator. It binds DNA through an 18bp binding site called esabox. When bound to 3OC6HSL, it is released to allow transcription.

We created an AND gate by placing one esabox as roadblock, and one esabox right before the first norR binding site of the PnorV promoter. This second esabox was added to create competitive binding between norR and esaR.

We have characterised the AND gate using constitutively expressed esaR on a medium copy plasmid (pRBR322/rop). We rely on the native NorR production in E.coli to activate the AND gate. The AND gate controls the expression of sfgfp, and is on a medium copy plasmid (p15A).

The AND gate was tested in presence of DETA/NO and 3OC6HSL. Activation was quantified through GFP expression. The AND gate works as expected, reaching maximal expression only when both NO and AHL are present at the highest concentration tested.

In order to ascertain that we are using the native NorR and not another transcriptional regulator, we used a Keio norR knock out strain (norR KO) and compared it to it's parent wild type strain (WT). In this case only PnorV was tested, which can also be found on the registry Part:BBa_K2116002. It was shown that PnorV can be activated by DETA/NO in the parent strain, but not in the norR KO strain.

A norR KO strain was used as a negative control to demonstrate that the native norR of E.coli can activate PnorV in the AND gate.


References: [1] Gardner, A. M. "Regulation Of The Nitric Oxide Reduction Operon (Norrvw) In Escherichia Coli. ROLE OF Norr AND Sigma 54 IN THE NITRIC OXIDE STRESS RESPONSE". Journal of Biological Chemistry 278.12 (2003): 10081-10086.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]