Difference between revisions of "Part:BBa K2013003"
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This part contains the coding sequence of MHETase which can hydrolyzes MHET to TPA and EG. MHETase is second enzymes on the downstream of PETase in the bacterium Ideonella sakaiensis 201-F6 that Japanese scientists found.MHET is degraded into two kinds of natural environment harmless substances: terephthalic acid and ethylene glycol. We carried out a codon optimization on this part.In addition，We carried out codon optimization on this part. | This part contains the coding sequence of MHETase which can hydrolyzes MHET to TPA and EG. MHETase is second enzymes on the downstream of PETase in the bacterium Ideonella sakaiensis 201-F6 that Japanese scientists found.MHET is degraded into two kinds of natural environment harmless substances: terephthalic acid and ethylene glycol. We carried out a codon optimization on this part.In addition，We carried out codon optimization on this part. | ||
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Experimental Validation | Experimental Validation | ||
| + | |||
This part is validated through Four ways: amplification, PCR, Enzyme cutting and Sequence. | This part is validated through Four ways: amplification, PCR, Enzyme cutting and Sequence. | ||
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Amplification | Amplification | ||
| + | |||
Enzyme:Q5 | Enzyme:Q5 | ||
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Primer-F:5′- GAATTCGCGGCCGCTTCTAGAGTACTAGAGTCACACAAAAGGGTACTAGATG-3′ | Primer-F:5′- GAATTCGCGGCCGCTTCTAGAGTACTAGAGTCACACAAAAGGGTACTAGATG-3′ | ||
| + | |||
Primer-R:5′- CGCTACTAGTATTATTACGGCGGAGCCGCGCAC-3′ | Primer-R:5′- CGCTACTAGTATTATTACGGCGGAGCCGCGCAC-3′ | ||
| + | |||
Results | Results | ||
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PCR | PCR | ||
| + | |||
Enzyme:Taq | Enzyme:Taq | ||
| + | |||
Primer-F:5′-CCACCTGACGTCTAAGAAAC-3′ | Primer-F:5′-CCACCTGACGTCTAAGAAAC-3′ | ||
| + | |||
Primer-R:5′-GTATTACCGCCTTTGAGTGA-3′ | Primer-R:5′-GTATTACCGCCTTTGAGTGA-3′ | ||
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Double digestion | Double digestion | ||
| − | After the assembly ,the plasmid was transferred into the Competent E. coli top10. After culturing overnight in LB,we minipreped the plasmid for double digestion .The first cutting procedure was performed with EcoRI and HindIII restriction endonuclease. The second cutting procedure was performed with PstI and BaHI restriction endonuclease. | + | |
| − | The plasmid was cutted in a 25μL system at 37 ℃ for 1 hours. The Electrophoresis was performed on a 1％ Agarose glu. | + | After the assembly ,the plasmid was transferred into the Competent E. coli top10. After culturing overnight in LB,we minipreped the plasmid for double digestion .The first cutting procedure was performed with EcoRI and HindIII restriction endonuclease. The second cutting procedure was performed with PstI and BaHI restriction endonuclease.The plasmid was cutted in a 25μL system at 37 ℃ for 1 hours. The Electrophoresis was performed on a 1％ Agarose glu. |
Revision as of 08:40, 13 October 2016
RBS and MHETase
This part contains the coding sequence of MHETase which can hydrolyzes MHET to TPA and EG. MHETase is second enzymes on the downstream of PETase in the bacterium Ideonella sakaiensis 201-F6 that Japanese scientists found.MHET is degraded into two kinds of natural environment harmless substances: terephthalic acid and ethylene glycol. We carried out a codon optimization on this part.In addition，We carried out codon optimization on this part.
Experimental Validation
This part is validated through Four ways: amplification, PCR, Enzyme cutting and Sequence.
Amplification
Enzyme:Q5
Primer-F:5′- GAATTCGCGGCCGCTTCTAGAGTACTAGAGTCACACAAAAGGGTACTAGATG-3′
Primer-R:5′- CGCTACTAGTATTATTACGGCGGAGCCGCGCAC-3′
Results
PCR
Enzyme:Taq
Primer-F:5′-CCACCTGACGTCTAAGAAAC-3′
Primer-R:5′-GTATTACCGCCTTTGAGTGA-3′
Results
Double digestion
After the assembly ,the plasmid was transferred into the Competent E. coli top10. After culturing overnight in LB,we minipreped the plasmid for double digestion .The first cutting procedure was performed with EcoRI and HindIII restriction endonuclease. The second cutting procedure was performed with PstI and BaHI restriction endonuclease.The plasmid was cutted in a 25μL system at 37 ℃ for 1 hours. The Electrophoresis was performed on a 1％ Agarose glu.
Results
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BamHI site found at 579
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 264
Illegal NgoMIV site found at 378
Illegal NgoMIV site found at 834
Illegal AgeI site found at 331
Illegal AgeI site found at 448 - 1000COMPATIBLE WITH RFC[1000]