Difference between revisions of "Part:BBa K1856003"

 
 
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Anderson Medium promoter-citrine
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Anderson Medium promoter assembled to citrine and T7 terminator
  
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===Usage and Biology===
 
===Usage and Biology===
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The anderson medium promoter is a constitutive promoter that is part of the collection of [https://parts.igem.org/Promoters/Catalog/Anderson Anderson Promoters] recovered in a library screen by [https://andersonlab.qb3.berkeley.edu/ Chris Anderson]. This promoter has been characterized in E. coli, and is available as the biobrick [https://parts.igem.org/Part:BBa_J23110 J23110]. The Yale iGEM team has assembled this promoter to citrine (an improved version of YFP, with excitation peak at 514nm and emission peak at 527nm) and a T7-terminator to quantify the level of expression in E. coli and in non-model organism hosts.
  
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This construct has been successfully cloned into E. coli using the broad-host range vector pKT230, a RSF1010 derived plasmid, as well as using the pPZP200 plasmid which can be transformed into agrobacterium and rhizobium. Leaky expression of citrine was observed.
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<span class='h3bb'>Sequence and Features</span>
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<partinfo>BBa_K1856003 SequenceAndFeatures</partinfo>
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RSF1010 plasmids belong to the IncQ group and can be transformed into a wide range of gram-negative bacteria as well as some gram-positive bacteria. These include cyanobacteria genera such as Synechocystis, Synechococcus and Anabaena, rhizobium genera such as Rhizobium and Sinorhizobium, and other genera such as Pseudomonas, Streptomyces and Mycobacterium. The plasmid is mobilizable by conjugation.
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We have used a derivative of pKT230 that is compatible with ligation-independent cloning using BsaI. pKT230 has a kanamycin-resistance marker.
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pPZP200 is a agrobacterium binary plasmid that can also be transformed into rhizobium genera. We also used a derivative that is LIC compatible for high-efficiency cloning of our constructs. pPZP200 has a spectinomycin-resistance marker.
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Beyond the E. coli work, the construct has also been successfully cloned into S. meliloti and PCR-verified.
  
 
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==Characterization==
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[[Image:Expression_Level_for_anderson-citrine_(pKT230-Lic).jpg|300px|right]]
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[[Image:Expression_Level_for_constitutive_promoters_in_S_meliloti_(pPZP200-LIC).jpg‎|300px|right]]
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===Measured strength===
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We found fluorescence levels nearly fifteen times above the baseline level in E. coli cells transformed with the promoter-citrine construct. We also found this promoter to be effective in driving gene expression in S. meliloti, with fluorescence levels of over four times that of the baseline observed.
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We further compared expression level of this promoter to two of the other promoters in the Anderson collection. The Anderson lab found relatively expression levels of 1, 0.33, and 0.10 respectively when comparing the promoters [https://parts.igem.org/Part:BBa_J23100 J23100 (Anderson Strong)], [https://parts.igem.org/Part:BBa_J23110 J23110 (Anderson Medium)] and [https://parts.igem.org/Part:BBa_J23114 J23114 (Anderson Weak)]. We found the relative expressions to be 1, 1.71 and 1.78 when we transformed our constructs into E.coli: [https://parts.igem.org/Part:BBa_K1856004 K1856004 (Anderson Strong-Citrine)], [https://parts.igem.org/Part:BBa_K1856003 K1856003 (Anderson Medium-Citrine)], [https://parts.igem.org/Part:BBa_K1856002 K1856002 (Anderson Weak-Citrine)]. This highlights that even as all three Anderson promoters are effective in driving gene expression in E. coli, the relative expression level may vary depending on the gene fused to the promoter and on the E. coli strain used. The Yale iGEM team's readings were obtained in E. coli DH10B.
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Comparing expression levels in S. meliloti (a rhizobium strain), the relative expression values were 1, 2.36, and no significant expression for the Anderson Strong, Anderson Medium, and Anderson Weak promoters respectively.
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These fluorescence readings are part of a series of readings taken using different inducible and constitutive promoters to drive citrine expression. See parts [https://parts.igem.org/Part:BBa_K1856000 K1856000], [https://parts.igem.org/Part:BBa_K1856001 K1856001], [https://parts.igem.org/Part:BBa_K1856003 K1856003], [https://parts.igem.org/Part:BBa_K1856004 K1856004], [https://parts.igem.org/Part:BBa_K1856005 K1856005], [https://parts.igem.org/Part:BBa_K1856006 K1856006] for details of the full characterization set.
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==Obtaining the Anderson weak promoter-citrine construct==
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The sequences of construct can be found via the table below.  The physical DNA can be obtained from:
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'''Via request''': The Yale iGEM team has the construct cloned into the broad-host range plasmid, pKT230, a RSF1010 derivative. This plasmid is known to work in cyanobacteria genera such as Synechocystis, Synechococcus and Anabaena, in rhizobium genera such as Rhizobium and Sinorhizobium. The team has also cloned the construct into pPZP200. Both are extremely versatile expression vectors. Please contact the Yale team if you would like to request for an aliquot of the constructs in these plasmids.
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'''Via the Registry distribution''': The constructs are included in the Registry distribution, cloned in [https://parts.igem.org/Part:pSB1C3 pSB1C3] backbone.
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<span class='h3bb'>Sequence and Features</span>
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<partinfo>BBa_K1856003 SequenceAndFeatures</partinfo>

Latest revision as of 22:54, 25 September 2015

Anderson Medium-citrine

Anderson Medium promoter assembled to citrine and T7 terminator

Usage and Biology

The anderson medium promoter is a constitutive promoter that is part of the collection of Anderson Promoters recovered in a library screen by Chris Anderson. This promoter has been characterized in E. coli, and is available as the biobrick J23110. The Yale iGEM team has assembled this promoter to citrine (an improved version of YFP, with excitation peak at 514nm and emission peak at 527nm) and a T7-terminator to quantify the level of expression in E. coli and in non-model organism hosts.

This construct has been successfully cloned into E. coli using the broad-host range vector pKT230, a RSF1010 derived plasmid, as well as using the pPZP200 plasmid which can be transformed into agrobacterium and rhizobium. Leaky expression of citrine was observed.

RSF1010 plasmids belong to the IncQ group and can be transformed into a wide range of gram-negative bacteria as well as some gram-positive bacteria. These include cyanobacteria genera such as Synechocystis, Synechococcus and Anabaena, rhizobium genera such as Rhizobium and Sinorhizobium, and other genera such as Pseudomonas, Streptomyces and Mycobacterium. The plasmid is mobilizable by conjugation.

We have used a derivative of pKT230 that is compatible with ligation-independent cloning using BsaI. pKT230 has a kanamycin-resistance marker.

pPZP200 is a agrobacterium binary plasmid that can also be transformed into rhizobium genera. We also used a derivative that is LIC compatible for high-efficiency cloning of our constructs. pPZP200 has a spectinomycin-resistance marker.

Beyond the E. coli work, the construct has also been successfully cloned into S. meliloti and PCR-verified.


Characterization

Expression Level for anderson-citrine (pKT230-Lic).jpg
Expression Level for constitutive promoters in S meliloti (pPZP200-LIC).jpg

Measured strength

We found fluorescence levels nearly fifteen times above the baseline level in E. coli cells transformed with the promoter-citrine construct. We also found this promoter to be effective in driving gene expression in S. meliloti, with fluorescence levels of over four times that of the baseline observed.

We further compared expression level of this promoter to two of the other promoters in the Anderson collection. The Anderson lab found relatively expression levels of 1, 0.33, and 0.10 respectively when comparing the promoters J23100 (Anderson Strong), J23110 (Anderson Medium) and J23114 (Anderson Weak). We found the relative expressions to be 1, 1.71 and 1.78 when we transformed our constructs into E.coli: K1856004 (Anderson Strong-Citrine), K1856003 (Anderson Medium-Citrine), K1856002 (Anderson Weak-Citrine). This highlights that even as all three Anderson promoters are effective in driving gene expression in E. coli, the relative expression level may vary depending on the gene fused to the promoter and on the E. coli strain used. The Yale iGEM team's readings were obtained in E. coli DH10B.

Comparing expression levels in S. meliloti (a rhizobium strain), the relative expression values were 1, 2.36, and no significant expression for the Anderson Strong, Anderson Medium, and Anderson Weak promoters respectively.

These fluorescence readings are part of a series of readings taken using different inducible and constitutive promoters to drive citrine expression. See parts K1856000, K1856001, K1856003, K1856004, K1856005, K1856006 for details of the full characterization set.

Obtaining the Anderson weak promoter-citrine construct

The sequences of construct can be found via the table below. The physical DNA can be obtained from:

Via request: The Yale iGEM team has the construct cloned into the broad-host range plasmid, pKT230, a RSF1010 derivative. This plasmid is known to work in cyanobacteria genera such as Synechocystis, Synechococcus and Anabaena, in rhizobium genera such as Rhizobium and Sinorhizobium. The team has also cloned the construct into pPZP200. Both are extremely versatile expression vectors. Please contact the Yale team if you would like to request for an aliquot of the constructs in these plasmids.

Via the Registry distribution: The constructs are included in the Registry distribution, cloned in pSB1C3 backbone.

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal EcoRI site found at 807
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 807
    Illegal NheI site found at 7
    Illegal NheI site found at 30
    Illegal NotI site found at 832
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 807
    Illegal BamHI site found at 801
    Illegal XhoI site found at 841
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 807
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 807
  • 1000
    COMPATIBLE WITH RFC[1000]