Difference between revisions of "Part:BBa K1682007:Design"
Raul.cuellar (Talk | contribs) (→References) |
|||
Line 16: | Line 16: | ||
===References=== | ===References=== | ||
+ | |||
+ | <p style="font-size:125%">Kelly, J. R., Rubin, A. J., Davis, J. H., Ajo-Franklin, C. M., Cumbers, J., Czar, M. J., ... & Endy, D. (2009). Measuring the activity of BioBrick promoters using an in vivo reference standard. <i>Journal of biological engineering</i>, 3(1), 4. | ||
+ | <br><br>International Plant Nutrition Institute. (1998). Functions of Potassium in Plants. <i>Better Crops</i>, 82(3). | ||
+ | <br><br>Keseler et al. (2013), EcoCyc: fusing model organism databases with systems biology, <i>Nucleic Acids Research</i> 41: D605-12.</p> | ||
+ | |||
+ | <p style="font-size:125%">Epstein, W., & Kim, B. S. (1971). Potassium transport loci in <i>Escherichia coli</i> K-12. <i>Journal of Bacteriology, 108</i>(2), 639-644. | ||
+ | <br><br>Jung, K., Tjaden, B., & Altendorf, K. (1997). Purification, reconstitution, and characterization of KdpD, the turgor sensor of <i>Escherichia coli.</i> <i>Journal of Biological Chemistry, 272</i>(16), 10847-10852. | ||
+ | <br><br>Jung, K., Veen, M., & Altendorf, K. (2000). K<sup>+</sup> and ionic strength directly influence the autophosphorylation activity of the putative turgor sensor KdpD of <i>Escherichia coli</i>. <i>Journal of Biological Chemistry, 275 </i>(51), 40142-40147. | ||
+ | <br><br>Jung, K., Krabusch, M., & Altendorf, K. (2001). Cs+ Induces the kdp operon of <i>Escherichia coli</i> by Lowering the Intracellular K<sup>+</sup> Concentration. <i>Journal of bacteriology, 183</i>(12), 3800-3803. | ||
+ | <br><br>Laermann, V., Ćudić, E., Kipschull, K., Zimmann, P., & Altendorf, K. (2013). The sensor kinase KdpD of <i>Escherichia coli</i> senses external K<sup>+</sup>. <i>Molecular microbiology, 88</i>(6), 1194-1204. | ||
+ | <br><br>Laimins, L. A., Rhoads, D. B., & Epstein, W. (1981). Osmotic control of kdp operon expression in <i>Escherichia coli. Proceedings of the National Academy of Sciences, 78 </i>(1), 464-468. | ||
+ | <br><br>Narayanan, A., Paul, L. N., Tomar, S., Patil, D. N., Kumar, P., & Yernool, D. A. (2012). Structure-function studies of DNA binding domain of response regulator KdpE reveals equal affinity interactions at DNA half-sites. <i>PloS one, 7</i>(1), e30102. | ||
+ | <br><br>Polarek, J. W., Williams, G., & Epstein, W. (1992). The products of the kdpDE operon are required for expression of the Kdp ATPase of <i>Escherichia coli. Journal of bacteriology, 174 </i>(7), 2145-2151. | ||
+ | <br><br>Roe, A. J., McLaggan, D., O’Byrne, C. P., & Booth, I. R. (2000). Rapid inactivation of the <i>Escherichia coli</i> Kdp K<sup>+</sup> uptake system by high potassium concentrations. <i>Molecular microbiology, 35</i>(5), 1235-1243. | ||
+ | <br><br>Sugiura, A., Nakashima, K., Tanaka, K., & Mizuno, T. (1992). Clarification of the structural and functional features of the osmoregulated kdp operon of <i>Escherichia coli. Molecular microbiology, 6</i>(13), 1769-1776. | ||
+ | <br><br>Voelkner, P., Puppe, W., & Altendorf, K. (1993). Characterization of the KdpD protein, the sensor kinase of the K<sup>+</sup>‐translocating Kdp system of <i>Escherichia coli. European Journal of Biochemistry, 217</i>(3), 1019-1026. | ||
+ | <br><br>Walderhaug, M. O., Polarek, J. W., Voelkner, P., Daniel, J. M., Hesse, J. E., Altendorf, K., & Epstein, W. (1992). KdpD and KdpE, proteins that control expression of the kdpABC operon, are members of the two-component sensor-effector class of regulators. <i>Journal of bacteriology, 174</i>(7), 2152-2159. | ||
+ | <br><br>Yan, H., Fukamachi, T., Saito, H., & Kobayashi, H. (2011). Expression and activity of Kdp under acidic conditions in <i>Escherichia coli. Biological and Pharmaceutical Bulletin, 34</i>(3), 426-429. | ||
+ | <br><br>Zhang, L., Jiang, W., Nan, J., Almqvist, J., & Huang, Y. (2014). The <i>Escherichia coli</i> CysZ is a pH dependent sulfate transporter that can be inhibited by sulfite. <i>Biochimica et Biophysica Acta (BBA)-Biomembranes, 1838</i>(7), 1809-1816. </p> |
Revision as of 03:19, 19 September 2015
PkdpF[-15, T>A] - GFP generator
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI.rc site found at 749
Design Notes
kdpFp[-15, T>A]
Source
kdpFp[-15, T>A]
References
Kelly, J. R., Rubin, A. J., Davis, J. H., Ajo-Franklin, C. M., Cumbers, J., Czar, M. J., ... & Endy, D. (2009). Measuring the activity of BioBrick promoters using an in vivo reference standard. Journal of biological engineering, 3(1), 4.
International Plant Nutrition Institute. (1998). Functions of Potassium in Plants. Better Crops, 82(3).
Keseler et al. (2013), EcoCyc: fusing model organism databases with systems biology, Nucleic Acids Research 41: D605-12.
Epstein, W., & Kim, B. S. (1971). Potassium transport loci in Escherichia coli K-12. Journal of Bacteriology, 108(2), 639-644.
Jung, K., Tjaden, B., & Altendorf, K. (1997). Purification, reconstitution, and characterization of KdpD, the turgor sensor of Escherichia coli. Journal of Biological Chemistry, 272(16), 10847-10852.
Jung, K., Veen, M., & Altendorf, K. (2000). K+ and ionic strength directly influence the autophosphorylation activity of the putative turgor sensor KdpD of Escherichia coli. Journal of Biological Chemistry, 275 (51), 40142-40147.
Jung, K., Krabusch, M., & Altendorf, K. (2001). Cs+ Induces the kdp operon of Escherichia coli by Lowering the Intracellular K+ Concentration. Journal of bacteriology, 183(12), 3800-3803.
Laermann, V., Ćudić, E., Kipschull, K., Zimmann, P., & Altendorf, K. (2013). The sensor kinase KdpD of Escherichia coli senses external K+. Molecular microbiology, 88(6), 1194-1204.
Laimins, L. A., Rhoads, D. B., & Epstein, W. (1981). Osmotic control of kdp operon expression in Escherichia coli. Proceedings of the National Academy of Sciences, 78 (1), 464-468.
Narayanan, A., Paul, L. N., Tomar, S., Patil, D. N., Kumar, P., & Yernool, D. A. (2012). Structure-function studies of DNA binding domain of response regulator KdpE reveals equal affinity interactions at DNA half-sites. PloS one, 7(1), e30102.
Polarek, J. W., Williams, G., & Epstein, W. (1992). The products of the kdpDE operon are required for expression of the Kdp ATPase of Escherichia coli. Journal of bacteriology, 174 (7), 2145-2151.
Roe, A. J., McLaggan, D., O’Byrne, C. P., & Booth, I. R. (2000). Rapid inactivation of the Escherichia coli Kdp K+ uptake system by high potassium concentrations. Molecular microbiology, 35(5), 1235-1243.
Sugiura, A., Nakashima, K., Tanaka, K., & Mizuno, T. (1992). Clarification of the structural and functional features of the osmoregulated kdp operon of Escherichia coli. Molecular microbiology, 6(13), 1769-1776.
Voelkner, P., Puppe, W., & Altendorf, K. (1993). Characterization of the KdpD protein, the sensor kinase of the K+‐translocating Kdp system of Escherichia coli. European Journal of Biochemistry, 217(3), 1019-1026.
Walderhaug, M. O., Polarek, J. W., Voelkner, P., Daniel, J. M., Hesse, J. E., Altendorf, K., & Epstein, W. (1992). KdpD and KdpE, proteins that control expression of the kdpABC operon, are members of the two-component sensor-effector class of regulators. Journal of bacteriology, 174(7), 2152-2159.
Yan, H., Fukamachi, T., Saito, H., & Kobayashi, H. (2011). Expression and activity of Kdp under acidic conditions in Escherichia coli. Biological and Pharmaceutical Bulletin, 34(3), 426-429.
Zhang, L., Jiang, W., Nan, J., Almqvist, J., & Huang, Y. (2014). The Escherichia coli CysZ is a pH dependent sulfate transporter that can be inhibited by sulfite. Biochimica et Biophysica Acta (BBA)-Biomembranes, 1838(7), 1809-1816.