Difference between revisions of "Part:BBa K1723003"
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This part is expressing the sgRNA (single guide RNA) [1] Z4 that can form a complex with dCas9-ω (BBa_K1723000). The complex was designed to bind the PAM rich URS J23117 promoter (BBa_K1723001) to activate the production of the target gene linked to the promoter. This part is a part of a gene regulation system built with dCas9-ω, in association with those other parts: sgRNA Z0 expressing cassette (BBa_K1723002) and gRNA Z35 expressing cassette (BBa_K1723004). This sgRNA coding sequence was biobricked with the promoter pBAD and its terminator, both used for our experiments. As the gRNA sequence has to start just after the promoter, the gRNA cannot be put under a promoter using the biobrick assembly system, so we provided a complete expressing cassette but it is still possible to PCR out the part to put it under another promoter. The terminator is specific to sgRNAs and it is recommended to keep it. | This part is expressing the sgRNA (single guide RNA) [1] Z4 that can form a complex with dCas9-ω (BBa_K1723000). The complex was designed to bind the PAM rich URS J23117 promoter (BBa_K1723001) to activate the production of the target gene linked to the promoter. This part is a part of a gene regulation system built with dCas9-ω, in association with those other parts: sgRNA Z0 expressing cassette (BBa_K1723002) and gRNA Z35 expressing cassette (BBa_K1723004). This sgRNA coding sequence was biobricked with the promoter pBAD and its terminator, both used for our experiments. As the gRNA sequence has to start just after the promoter, the gRNA cannot be put under a promoter using the biobrick assembly system, so we provided a complete expressing cassette but it is still possible to PCR out the part to put it under another promoter. The terminator is specific to sgRNAs and it is recommended to keep it. | ||
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| + | <b>This part was experimentally validated, see </b>https://parts.igem.org/Part:BBa_K1723003:Experience | ||
Discover more parts that can work with this one: | Discover more parts that can work with this one: | ||
Latest revision as of 00:51, 19 September 2015
sgRNA Z4 expressing cassette
This part is expressing the sgRNA (single guide RNA) [1] Z4 that can form a complex with dCas9-ω (BBa_K1723000). The complex was designed to bind the PAM rich URS J23117 promoter (BBa_K1723001) to activate the production of the target gene linked to the promoter. This part is a part of a gene regulation system built with dCas9-ω, in association with those other parts: sgRNA Z0 expressing cassette (BBa_K1723002) and gRNA Z35 expressing cassette (BBa_K1723004). This sgRNA coding sequence was biobricked with the promoter pBAD and its terminator, both used for our experiments. As the gRNA sequence has to start just after the promoter, the gRNA cannot be put under a promoter using the biobrick assembly system, so we provided a complete expressing cassette but it is still possible to PCR out the part to put it under another promoter. The terminator is specific to sgRNAs and it is recommended to keep it.
This part was experimentally validated, see https://parts.igem.org/Part:BBa_K1723003:Experience
Discover more parts that can work with this one:
http://2015.igem.org/Team:EPF_Lausanne/Part_Collection
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal PstI site found at 185
- 12INCOMPATIBLE WITH RFC[12]Illegal PstI site found at 185
- 21INCOMPATIBLE WITH RFC[21]Illegal BamHI site found at 126
- 23INCOMPATIBLE WITH RFC[23]Illegal PstI site found at 185
- 25INCOMPATIBLE WITH RFC[25]Illegal PstI site found at 185
- 1000COMPATIBLE WITH RFC[1000]
References
[1] Alec AK Nielsen & Christopher A Voigt (2014). Multi-input CRISPR/Cas circuits that interface host regulatory network. Molecular systems biology, 10(11), 763.