Difference between revisions of "Part:BBa K1758360"
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<partinfo>BBa_K1758360 short</partinfo>
 
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This is a part of the gab operon of Bacillus subtilis. It includes the gene for the repressor protein GabR under the control of its natural promoter as well as the gabT promoter, which is regulated by GabR. GabR is inactivated by &#947;-aminobutyrate (GABA). The expression of any gene that is inserted downstream of this part can therefore be induced by GABA.
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This is a part of the gab operon of Bacillus subtilis. It includes the gene for the transcriptional regulator GabR under the control of its natural promoter as well as the gabT promoter, which is regulated by GabR. GabR is activated by &#947;-aminobutyrate (GABA). The expression of any gene that is inserted downstream of this part can therefore be induced by GABA.
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===Usage and Biology===
 
  
 
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<partinfo>BBa_K1758360 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K1758360 SequenceAndFeatures</partinfo>
  
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===Usage and Biology===
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This part consists of the gabR gene from Bacillus subtilis and the intergenic region between gabR and gabT, which includes the promoters of both genes. gabR encodes a transcription factor which in vivo activates the expression of the gabTD operon in the presence of  γ-aminobutyric acid (GABA) and pyridoxal 5′-phosphate (PLP). gabT and gabD encode γ-aminobutyrate aminotransferase and succinic semialdehyde dehydrogenase, respectively. These enzymes enable B. subtilis to utilize GABA as a nitrogen and carbon source. GabR also negatively autoregulates its own expression, both in the presence and abscence of GABA.
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We worked with this part because GABA is structurally related to GHB, a frequently used date rape drug. By enzymatically converting GHB to GABA it would be possible to detect this drug using this part in combination with a reporter gene. We characterized this part after inserting mRFP1 downstream of the part. The data show a clear induction of mRFP1 expression in the presence of GABA. 
  
 
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Revision as of 23:48, 25 August 2015

gabR gene and gabT promoter from Bacillus subtilis

This is a part of the gab operon of Bacillus subtilis. It includes the gene for the transcriptional regulator GabR under the control of its natural promoter as well as the gabT promoter, which is regulated by GabR. GabR is activated by γ-aminobutyrate (GABA). The expression of any gene that is inserted downstream of this part can therefore be induced by GABA.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 1380
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Usage and Biology

This part consists of the gabR gene from Bacillus subtilis and the intergenic region between gabR and gabT, which includes the promoters of both genes. gabR encodes a transcription factor which in vivo activates the expression of the gabTD operon in the presence of γ-aminobutyric acid (GABA) and pyridoxal 5′-phosphate (PLP). gabT and gabD encode γ-aminobutyrate aminotransferase and succinic semialdehyde dehydrogenase, respectively. These enzymes enable B. subtilis to utilize GABA as a nitrogen and carbon source. GabR also negatively autoregulates its own expression, both in the presence and abscence of GABA.

We worked with this part because GABA is structurally related to GHB, a frequently used date rape drug. By enzymatically converting GHB to GABA it would be possible to detect this drug using this part in combination with a reporter gene. We characterized this part after inserting mRFP1 downstream of the part. The data show a clear induction of mRFP1 expression in the presence of GABA.