Difference between revisions of "Part:BBa K1413023"
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===Usage and Biology=== | ===Usage and Biology=== | ||
Combinated with the part <a href="https://parts.igem.org/Part:BBa_K1413024">BBa_K1413024</a>, it could be used like PCb biosensor. | Combinated with the part <a href="https://parts.igem.org/Part:BBa_K1413024">BBa_K1413024</a>, it could be used like PCb biosensor. | ||
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<span class='h3bb'>Sequence and Features</span> | <span class='h3bb'>Sequence and Features</span> | ||
<partinfo>BBa_K1413023 SequenceAndFeatures</partinfo> | <partinfo>BBa_K1413023 SequenceAndFeatures</partinfo> |
Revision as of 22:10, 1 November 2014
Promoter-RBS-bphr2 mutated-Terminator
bphR2 gene, from Pseudomonas pseudoalcaligens KF707, allows the transcription of bphR1 which activates the genes of degradation of biphenyls. In our project, genes of degradation was replaced by RFP gene to detect the compound.
This part is composed by constitutive promoter (BBa_J23114), RBS (BBa_B0034), bphr2 (BBa_K1413021) and terminator (BBa_B0015).
Mechanism explanation:In absence of PCBs, bphR2 (BBa_K1413021) is bound to bphR1 promoter which activate the transcription of RFP but in very low expression. In presence of PCBs, when compound diffuses into the media, it binds to bphr2 protein which undergoes a conformational change that permits to activate more stronger bphR1 promoter and increase the transcription of RFP.
Usage and Biology
Combinated with the part <a href="https://parts.igem.org/Part:BBa_K1413024">BBa_K1413024</a>, it could be used like PCb biosensor.
Sequence and Features
Assembly Compatibility:
- 10COMPATIBLE WITH RFC[10]
- 12INCOMPATIBLE WITH RFC[12]Illegal NheI site found at 7
Illegal NheI site found at 30 - 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 568
- 1000INCOMPATIBLE WITH RFC[1000]Illegal SapI.rc site found at 352