Difference between revisions of "Part:BBa K1413044:Design"
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===Design Notes=== | ===Design Notes=== | ||
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| − | This plasmid has been built by Golden Gate. | + | This plasmid has been built by Golden Gate from pNK2 plasmid. |
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<br/>To isolate the two plasmids it would be possible to digeste the merged plasmid with BglII and then extract by gel eletrophoresis our Transposon plasmid, which only contains the core elements needed for the transposition. Between the two transposable elements iS10 we will eventually integrate the biobrick prefix and suffix to be able to integrate any biobrick in a genome. | <br/>To isolate the two plasmids it would be possible to digeste the merged plasmid with BglII and then extract by gel eletrophoresis our Transposon plasmid, which only contains the core elements needed for the transposition. Between the two transposable elements iS10 we will eventually integrate the biobrick prefix and suffix to be able to integrate any biobrick in a genome. | ||
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<img src="https://static.igem.org/mediawiki/parts/b/b4/Plqs%3Bid.png" width=50%/> | <img src="https://static.igem.org/mediawiki/parts/b/b4/Plqs%3Bid.png" width=50%/> | ||
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Our aim was to merged pSB1C3 and pNK2 into a single plasmid, in order to have a plasmid that would replicate in non-pir cells. Also, our goal was to have a plasmid matching the requirements of the biobrick format. Here we used the pSB1C3 plasmid as the backbone. | Our aim was to merged pSB1C3 and pNK2 into a single plasmid, in order to have a plasmid that would replicate in non-pir cells. Also, our goal was to have a plasmid matching the requirements of the biobrick format. Here we used the pSB1C3 plasmid as the backbone. | ||
Revision as of 18:54, 1 November 2014
A fusion of Transposon Plasmid and pSB1C3
- 10INCOMPATIBLE WITH RFC[10]Illegal prefix found in sequence at 2415
Illegal suffix found in sequence at 2437 - 12INCOMPATIBLE WITH RFC[12]Illegal EcoRI site found at 2415
Illegal NheI site found at 947
Illegal SpeI site found at 2438
Illegal PstI site found at 2452
Illegal NotI site found at 2421
Illegal NotI site found at 2445 - 21INCOMPATIBLE WITH RFC[21]Illegal EcoRI site found at 2415
Illegal BglII site found at 5
Illegal BglII site found at 2628
Illegal BamHI site found at 2475 - 23INCOMPATIBLE WITH RFC[23]Illegal prefix found in sequence at 2415
Illegal suffix found in sequence at 2438 - 25INCOMPATIBLE WITH RFC[25]Illegal prefix found in sequence at 2415
Illegal XbaI site found at 2430
Illegal SpeI site found at 2438
Illegal PstI site found at 2452 - 1000COMPATIBLE WITH RFC[1000]
Design Notes
This plasmid has been built by Golden Gate from pNK2 plasmid.
To isolate the two plasmids it would be possible to digeste the merged plasmid with BglII and then extract by gel eletrophoresis our Transposon plasmid, which only contains the core elements needed for the transposition. Between the two transposable elements iS10 we will eventually integrate the biobrick prefix and suffix to be able to integrate any biobrick in a genome.
Our aim was to merged pSB1C3 and pNK2 into a single plasmid, in order to have a plasmid that would replicate in non-pir cells. Also, our goal was to have a plasmid matching the requirements of the biobrick format. Here we used the pSB1C3 plasmid as the backbone.
To isolate the two plasmids it would be possible to digeste the merged plasmid with BglII and then extract by gel eletrophoresis our Transposon plasmid, which only contains the core elements needed for the transposition. Between the two transposable elements iS10 we will eventually integrate the biobrick prefix and suffix to be able to integrate any biobrick in a genome.
Source
Each blend provide to plasmid pNK2. This is Bryan JESTER who give pNK2.