Difference between revisions of "Part:BBa K1470000"

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<partinfo>BBa_K1470000 short</partinfo>
 
<partinfo>BBa_K1470000 short</partinfo>
  
<h4>Natural function</h4>
+
<h4>Natural Function</h4>
<p>The cationic amino acid transporter 1 (CAT-1) is a part of the CAT family which is a subfamily of the solute carrier family 7 (SLC7). They are expressed ubiquitously and build the main entry gate for amino acids such as histidine, arginine or ornithin in mammalian cells. They enable the influx of their substrate in a Na<sup>+</sup> independent way and also under certain circumstances the eflux. Additionally it was shown that absence of CAT-1 leads to non-viable mice pubs [1][2].</p>
+
<p>The cationic amino acid transporter 1 (CAT-1) is part of the CAT family which is a subfamily of the solute carrier family 7 (SLC7). These solute carriers are expressed ubiquitously and build the main entry gate for amino acids such as histidine, arginine or ornithin in mammalian cells. They enable the influx of their substrate independent of Na<sup>+</sup>. Additionally it was shown that the absence of CAT-1 leads to non-viable mice pubs [1][2].</p>
  
 
<h4>Structure and virus recognition</h4>
 
<h4>Structure and virus recognition</h4>
  
<p>CAT-1 is a 66 kDa membrane protein. It's built up of 622 amino acids contains 14 transmembrane domains which resolutes in seven extracellulare and eight intracellulare domains. There are two sites for N-glycosylation in the third extracellulare loop. The glycosyled position is very important for virus' entry. The murine leukeamia virus is only able to enter the cell, when it detects the CAT-1 sugar-bound moieties[3].</p><br>
+
<p>CAT-1 is a 66 kDa membrane protein. It is built out of up to 622 amino acids contains 14 transmembrane domains which resolutes in seven extracellulare and eight intracellulare domains. There are two sites for N-glycosylation in the third extracellulare loop. The glycosyled position is rather significant for the entering by the virus. The murine leukeamia virus is only able to enter the cell, when it detects the CAT-1 sugar-bound moieties[3].</p><br>
  
 
https://static.igem.org/mediawiki/2014/7/7c/2014Freiburg_Scheme_mCAT-1.jpg
 
https://static.igem.org/mediawiki/2014/7/7c/2014Freiburg_Scheme_mCAT-1.jpg
 
<p>Scheme of mCAT-1. Members of the CAT family are predicted to have 14 transmembrane domains with intracellular N- and C-termini. Two asparagine residues in the third extracellular loop (indicated as branched lines) have been shown to be glycosylated [7].</p><br>
 
<p>Scheme of mCAT-1. Members of the CAT family are predicted to have 14 transmembrane domains with intracellular N- and C-termini. Two asparagine residues in the third extracellular loop (indicated as branched lines) have been shown to be glycosylated [7].</p><br>
  
<p>Also a comparison between CAT-1 sequences from different species like rats or hamsters shows that this region doesn't include conserved amino acids making a virus infection impossible [4].  
+
<p>A comparison between CAT-1 sequences from different species like rats and hamsters shows as well that this region does not include conserved amino acids making a virus infection impossible [4].  
  
The mouse CAT-1 was originally identified by Albritton in 1989 as the receptor for murine ecotropic leukemia viruses (MuLV) [5]. It was shown that in the presence of mCAT-1 on the surface of mouse cells, these cells could be infected by the MuLV. However, human cells acquire the susceptibility to infection by MuLV only if the cells express mCAT-1 ectopically. Studies of Albritton et al. have shown that amino acids in the extracellular loop three of mCAT-1 are critical for virus binding [6].</p>  
+
The mouse CAT-1 was originally identified by Albritton in 1989 as the receptor for murine ecotropic leukemia viruses (MuLV) [5]. It was shown that these cells could be infected by the MuLV in the presence of mCAT-1 on the surface of mouse cells. However, human cells acquire the susceptibility to infection by MuLV only if the cells express mCAT-1 ectopically. Studies by Albritton et al. have shown that amino acids in the extracellular loop three of mCAT-1 are critical for virus binding [6].</p>  
 
<br>
 
<br>
 
<h4>Receptor expression</h4>
 
<h4>Receptor expression</h4>
To provide optimal conditions for viral infection, we determined the best timepoint for transduction with most presenting receptor on the cell surface. Therefore we transfected HEK-293T cells with CAT-1 fused with a HA-tag. Cells expressing CAT-1 were analyzed after distinct incubation times.</p><br>
+
To provide optimal conditions for viral infection, the best point in time for transduction with the largest number of receptors present on the cell surface was determined. On that account HEK-293T cells had been transfected with CAT-1 fused with a HA-tag. Cells expressing CAT-1 were analyzed after distinct incubation times.</p><br>
  
 
https://static.igem.org/mediawiki/parts/1/1f/Freiburg_ha_tag_mcat.png
 
https://static.igem.org/mediawiki/parts/1/1f/Freiburg_ha_tag_mcat.png
<p>Expression time of the receptor that was transfected into HEK-293T cells. After transfection with mCAT-1-HA cells were lysed with RIPA buffer at distinct time points. A Western blot was performed using an anti-HA antibody.</p><br>
+
<p>Expression time of the receptor that was transfected into HEK-293T cells. After transfection with mCAT-1-HA cells were lysed with RIPA buffer at distinct points of time. A western blot was performed using an anti-HA antibody.</p><br>
  
<p>We found that the expression of the receptor peaked at 24 h after transfection. In later experiments we used this time point for viral infections.</p>
+
<p>We found out that the expression of the receptor peaked at 24 hours after transfection. In later experiments we performed viral infections past that timeframe based on these results.</p>
  
 
<h4>Localisation of CAT-1</h4>
 
<h4>Localisation of CAT-1</h4>
<p>We wanted to detect the localisation of CAT-1 and fused mCherry to its N-terminus. Using confocal microscopy we varified not only the protein on the cell surface but showed in a spatial way via several sectional planes how the receptore is expressed by HEK-293T cells.</p>
+
<p>We wanted to detect the localisation of CAT-1 and fused mCherry to its N-terminus. Using confocal microscopy we varified not only the existance of the protein on the cell surface but showed in a spatial way via several sectional planes how the receptore is expressed by HEK-293T cells.</p>
  
  
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<p>Confocal pictures were taken with a 20x plan apo objective. Nuclear staining (DAPI) is shown in blue and the mCAT-1-mCherry in red.</p><br>
 
<p>Confocal pictures were taken with a 20x plan apo objective. Nuclear staining (DAPI) is shown in blue and the mCAT-1-mCherry in red.</p><br>
  
<p>Please click on the link below to view a spatial resolution of CAT-1 in a HEK-293T cell watching the presence of CAT-1 on the surface or inside the cells, like Golgi apparatus or Endoplasmic reticulum</p><br>
+
<p>Please click on the link below to view a spatial resolution of CAT-1 in a HEK-293T cell observing the presence of CAT-1 on the surface or inside the cells, like Golgi apparatus or endoplasmic reticulum</p><br>
  
 
<div><html><video poster="https://static.igem.org/mediawiki/2014/0/00/Freiburg2014_Receptor_localization_04.png" controls>
 
<div><html><video poster="https://static.igem.org/mediawiki/2014/0/00/Freiburg2014_Receptor_localization_04.png" controls>

Revision as of 14:53, 24 October 2014

Ecotropic murine leukemia virus (MuLV) receptor / Cationic amino acid transporter 1 (CAT-1)

Natural Function

The cationic amino acid transporter 1 (CAT-1) is part of the CAT family which is a subfamily of the solute carrier family 7 (SLC7). These solute carriers are expressed ubiquitously and build the main entry gate for amino acids such as histidine, arginine or ornithin in mammalian cells. They enable the influx of their substrate independent of Na+. Additionally it was shown that the absence of CAT-1 leads to non-viable mice pubs [1][2].

Structure and virus recognition

CAT-1 is a 66 kDa membrane protein. It is built out of up to 622 amino acids contains 14 transmembrane domains which resolutes in seven extracellulare and eight intracellulare domains. There are two sites for N-glycosylation in the third extracellulare loop. The glycosyled position is rather significant for the entering by the virus. The murine leukeamia virus is only able to enter the cell, when it detects the CAT-1 sugar-bound moieties[3].


2014Freiburg_Scheme_mCAT-1.jpg

Scheme of mCAT-1. Members of the CAT family are predicted to have 14 transmembrane domains with intracellular N- and C-termini. Two asparagine residues in the third extracellular loop (indicated as branched lines) have been shown to be glycosylated [7].


A comparison between CAT-1 sequences from different species like rats and hamsters shows as well that this region does not include conserved amino acids making a virus infection impossible [4]. The mouse CAT-1 was originally identified by Albritton in 1989 as the receptor for murine ecotropic leukemia viruses (MuLV) [5]. It was shown that these cells could be infected by the MuLV in the presence of mCAT-1 on the surface of mouse cells. However, human cells acquire the susceptibility to infection by MuLV only if the cells express mCAT-1 ectopically. Studies by Albritton et al. have shown that amino acids in the extracellular loop three of mCAT-1 are critical for virus binding [6].


Receptor expression

To provide optimal conditions for viral infection, the best point in time for transduction with the largest number of receptors present on the cell surface was determined. On that account HEK-293T cells had been transfected with CAT-1 fused with a HA-tag. Cells expressing CAT-1 were analyzed after distinct incubation times.</p>

Freiburg_ha_tag_mcat.png

Expression time of the receptor that was transfected into HEK-293T cells. After transfection with mCAT-1-HA cells were lysed with RIPA buffer at distinct points of time. A western blot was performed using an anti-HA antibody.


We found out that the expression of the receptor peaked at 24 hours after transfection. In later experiments we performed viral infections past that timeframe based on these results.

Localisation of CAT-1

We wanted to detect the localisation of CAT-1 and fused mCherry to its N-terminus. Using confocal microscopy we varified not only the existance of the protein on the cell surface but showed in a spatial way via several sectional planes how the receptore is expressed by HEK-293T cells.


Small_Mcat_mcherry.jpg

Confocal pictures were taken with a 20x plan apo objective. Nuclear staining (DAPI) is shown in blue and the mCAT-1-mCherry in red.


Please click on the link below to view a spatial resolution of CAT-1 in a HEK-293T cell observing the presence of CAT-1 on the surface or inside the cells, like Golgi apparatus or endoplasmic reticulum