Difference between revisions of "Template:HelpPage/SupportedStandards"

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===Supported Standards===
 
===Supported Standards===
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By supporting a standard, the Registry software can detect and understand the assembly process for parts. This includes:
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By supporting an assembly standard, the Registry software can detect and understand the assembly process for parts. This includes:
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*Detection of illegal restriction sites in a part's sequence
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*Detection of '''illegal restriction''' sites in a part's sequence
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*Recognizing assembly scars in composite parts
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*Recognizing '''assembly scars''' in composite parts
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*Identification of a sample's assembly standard, through sequence verification of the sample's prefix and suffix
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*Identification of a '''sample's assembly standard''', through sequence verification of the sample's prefix and suffix
 
**'''Remember''', a part can have many samples in the Registry's Repository. Those samples can be in plasmid backbones of different assembly standards.
 
**'''Remember''', a part can have many samples in the Registry's Repository. Those samples can be in plasmid backbones of different assembly standards.
  
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View the [https://parts.igem.org/partsdb/scars.cgi Assembly Systems CGI Page] to see exactly what the Registry software looks for in these supported assembly standards
  
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The following assembly standards are currently supported by the Registry (click to view RFC documentation):
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Click below to view the supported assembly standards as specified by their original RFC  
 
*[http://dspace.mit.edu/handle/1721.1/45138 10] - '''BioBrick'''
 
*[http://dspace.mit.edu/handle/1721.1/45138 10] - '''BioBrick'''
 
*[http://dspace.mit.edu/handle/1721.1/45139 12] - '''BioBrick 2'''
 
*[http://dspace.mit.edu/handle/1721.1/45139 12] - '''BioBrick 2'''
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*[http://dspace.mit.edu/handle/1721.1/45140 25] - '''Freiburg Standard'''
 
*[http://dspace.mit.edu/handle/1721.1/45140 25] - '''Freiburg Standard'''
 
*1000 - '''MoClo'''
 
*1000 - '''MoClo'''
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[https://parts.igem.org/partsdb/scars.cgi Assembly Systems CGI Page]
 

Revision as of 06:59, 17 June 2014

Supported Standards

By supporting an assembly standard, the Registry software can detect and understand the assembly process for parts. This includes:

  • Detection of illegal restriction sites in a part's sequence
  • Recognizing assembly scars in composite parts
  • Identification of a sample's assembly standard, through sequence verification of the sample's prefix and suffix
    • Remember, a part can have many samples in the Registry's Repository. Those samples can be in plasmid backbones of different assembly standards.

View the Assembly Systems CGI Page to see exactly what the Registry software looks for in these supported assembly standards


Click below to view the supported assembly standards as specified by their original RFC

  • [http://dspace.mit.edu/handle/1721.1/45138 10] - BioBrick
  • [http://dspace.mit.edu/handle/1721.1/45139 12] - BioBrick 2
  • [http://dspace.mit.edu/handle/1721.1/46747 21] - BglBricks
  • [http://dspace.mit.edu/handle/1721.1/32535 23] - Silver Standard
  • [http://dspace.mit.edu/handle/1721.1/45140 25] - Freiburg Standard
  • 1000 - MoClo