Difference between revisions of "Part:BBa K864100"

Revision as of 17:36, 31 October 2013

Super Yellow Fluorescent Protein 2 (SYFP2)

This part codes for the bright yellow fluorescent protein SYFP2. SYFP2 is a GFP based monomeric protein with optimized folding, maturation and a narrow fluorescence emission spectrum with a maximum of 515 nm. Bacteria expressing SYFP2 are reported to be 12 times brighter than those expressing EYFP(Q69K) and almost 2-fold brighter than bacteria expressing Venus (Kremer et al 2006). Mutations compared to wtGFP amino acid sequence (GenBank Accession number M62653) are F46L F64L S65G S72A M153T V163A S175G T203Y A206K. See the article listed in references. The sequence has been codon optimized for expression in E coli by DNA 2.0.

Kremers et al reported the following data:

Excitation peak: 515 nm. Emission peak: 527 nm. Relative brightness to EYFP2(Q96K) in E coli: 12.0. Extinction Coefficient (M-1 cm-1): 101000. Quantum Yield: 0.68.

Usage and Biology

This part is useful as a reporter.

iGEM12_Uppsala_University. Fluorescence on UV table. The images above show E coli constitutively expressing SYFP BBa_K864100 using promoters with different strengths.

Team Warsaw 2013 designed sfYFP and compared it to SYFP2. Measurment was conducted on pSB1A3 plasmid with J23100 promoter and B0034 RBS in living cells in RF.

Fig 1. – Fluorescence of sfYFP and SYFP2 compared to sfGFP (BBa_I746908).

-	Samples			Arithmetic mean	Standard deviation
sfGFP	100,60	100,37	99,02	100,00	0,85
sfYFP	218,87	216,51	217,87	217,75	1,19
SYFP2	424,70	418,26	412,40	418,45	6,15

Tab 1. – Fluorescence of sfYFP and SYFP2 compared to sfGFP (BBa_I746908).

References

[http://pubs.acs.org/doi/abs/10.1021/bi0516273] Kremers, G.-J., Goedhart, J., van Munster, E. B., & Gadella, T. W. J. (2006). Cyan and yellow super fluorescent proteins with improved brightness, protein folding, and FRET Förster radius. Biochemistry, 45(21), 6570–6580. doi:10.1021/bi0516273

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
COMPATIBLE WITH RFC[1000]

@@ Line 11: / Line 11: @@
 Extinction Coefficient (M-1 cm-1): 101000.
 Quantum Yield: 0.68.
+===Usage and Biology===
+This part is useful as a reporter.
+[[Image:SYFP2_expression.jpg|800px]]
+'''iGEM12_Uppsala_University'''. Fluorescence on UV table. The images above show ''E coli'' constitutively expressing SYFP <partinfo>K864100</partinfo> using promoters with different strengths.
-Team Warsaw 2013 designed sfYFP and compared it to SYFP2. Measurment was conducted on pSB1A3 plasmid with J23100 promoter and B0034 RBS in living cells in RF.
+'''Team Warsaw 2013''' designed sfYFP and compared it to SYFP2. Measurment was conducted on pSB1A3 plasmid with J23100 promoter and B0034 RBS in living cells in RF.
 [[File:Sfyfpsyfp2wykres.jpg|center|541px|border|caption]]
-''Fig 1. – Fluorescence of sfYFP and SYFP2 compared to sfGFP (BBa_I746908).''
+''Fig 1. – Fluorescence of sfYFP and SYFP2 compared to sfGFP (<partinfo>BBa_I746908</partinfo>).''
 {| class="wikitable"
@@ Line 47: / Line 54: @@
 |-
 |}
-''Tab 1. – Fluorescence of sfYFP and SYFP2 compared to sfGFP (BBa_I746908).''
+''Tab 1. – Fluorescence of sfYFP and SYFP2 compared to sfGFP (<partinfo>BBa_I746908</partinfo>).''
-===Usage and Biology===
-This part is useful as a reporter.
-[[Image:SYFP2_expression.jpg|800px]]
-'''iGEM12_Uppsala_University'''. Fluorescence on UV table. The images above show ''E coli'' constitutively expressing SYFP <partinfo>K864100</partinfo> using promoters with different strengths.
 ===References===
 [http://pubs.acs.org/doi/abs/10.1021/bi0516273] Kremers, G.-J., Goedhart, J., van Munster, E. B., & Gadella, T. W. J. (2006). Cyan and yellow super fluorescent proteins with improved brightness, protein folding, and FRET Förster radius. Biochemistry, 45(21), 6570–6580. doi:10.1021/bi0516273
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