Difference between revisions of "Part:BBa K1033207"

(Usage and Biology)
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It was made by replacing the replicon of the BioBrick compatible plasmid [[Part:BBa_K864001|pSB4C15]] with a broad range replicon from the engineered plasmid  pJP059. The replicon is also referred to as pSH71 and is related to pWV01 and the same family of rolling circle replicating plasmids.<sup>[[#Footnote 1|1]]</sup> We have then changed the resistance cassette to one conferring erythromycin resistance, taken from the <i>reuteri</i> plasmid [http://www.ncbi.nlm.nih.gov/nuccore/AY556392.1 pLUL631]. It is easy to change resistance again thanks to the extra cloning sites of pSB4C15.
 
It was made by replacing the replicon of the BioBrick compatible plasmid [[Part:BBa_K864001|pSB4C15]] with a broad range replicon from the engineered plasmid  pJP059. The replicon is also referred to as pSH71 and is related to pWV01 and the same family of rolling circle replicating plasmids.<sup>[[#Footnote 1|1]]</sup> We have then changed the resistance cassette to one conferring erythromycin resistance, taken from the <i>reuteri</i> plasmid [http://www.ncbi.nlm.nih.gov/nuccore/AY556392.1 pLUL631]. It is easy to change resistance again thanks to the extra cloning sites of pSB4C15.
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<i>Please see design subpage for more details</i>
  
 
===Results===
 
===Results===

Revision as of 19:39, 4 October 2013

Shuttle vector pSBLbE for E. coli and Lactobacillus

The backbone pSBLbE is a shuttle vector between E. coli, Lacotbacillus. It has been grown in E. coli and used to transform Lactobacillus reuteri. It appears to be a low copy plasmid in E. coli, with a higher copy number in Lactobacillus, which is according to expectations.

Usage and Biology

The replicon pSH71 is known from literature to replicate in a wide range of gram positive and gram negative species1, and the backbone is meant to be used for work in E. coli and different LAB when it is necessary to do preliminary work in E. coli, and transfer finished constructs to LAB.

It was made by replacing the replicon of the BioBrick compatible plasmid pSB4C15 with a broad range replicon from the engineered plasmid pJP059. The replicon is also referred to as pSH71 and is related to pWV01 and the same family of rolling circle replicating plasmids.1 We have then changed the resistance cassette to one conferring erythromycin resistance, taken from the reuteri plasmid [http://www.ncbi.nlm.nih.gov/nuccore/AY556392.1 pLUL631]. It is easy to change resistance again thanks to the extra cloning sites of pSB4C15.

Please see design subpage for more details

Results

The vector has been verified to work in E. coli and to provide resistance against 50 µg/ml erythromycin on LB-agar plates. The copy number has been estimated to be relatively low, judging by initially low expression of RFP.

It has also been shown to grow in Lactobacillus reuteri 100-23 on MRS-plates containing 5 µg/ml erythromycin, giving resistance to the transformed cells while negative controls were unable to surive. Here the copy number has been hard to assess, since the RFP currently used is not optimal for Lactobacillus.


Uppsala2013_chromo_small.png Uppsala2013_Lbtransformation_small.png

Fig. 1: E. coli D5-alpha expressing RFP in our plasmid pSBLbE on erythromycin LB-agar plates.

Fig. 2: L. reuteri 100-23 with (left) and without (right) pSBLbE on erythromycin MRS-plates. Proving a successfull transformation of L. reuteri!

References

[1] I. Pérez-Arellano, M. Zúñiga, and G. Pérez-Martínez (2001), [http://www.sciencedirect.com/science/article/pii/S0147619X01915318 Construction of Compatible Wide-Host-Range Shuttle Vectors for Lactic Acid Bacteria and Escherichia coli], Plasmid 46 (2) 106-116.

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal prefix found in sequence at 3286
    Illegal suffix found in sequence at 1
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 3286
    Illegal NheI site found at 1981
    Illegal SpeI site found at 2
    Illegal PstI site found at 16
    Illegal NotI site found at 9
    Illegal NotI site found at 3292
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 3286
    Illegal BamHI site found at 1960
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal prefix found in sequence at 3286
    Illegal suffix found in sequence at 2
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal prefix found in sequence at 3286
    Illegal XbaI site found at 3301
    Illegal SpeI site found at 2
    Illegal PstI site found at 16
  • 1000
    COMPATIBLE WITH RFC[1000]