Difference between revisions of "Part:BBa K1065204"
(→Toxicity and sulfur test) |
|||
Line 1: | Line 1: | ||
__NOTOC__ | __NOTOC__ | ||
− | <partinfo> | + | <partinfo>BBa_K1065204 short</partinfo> |
2-oxoglutarate oxygenase/decarboxylase is an Ethylene Forming Enzyme (EFE) from ''Pseudomonas Siringae pv'', that catalyzes Ethylene biosynthesis from 2-oxoglutarate. The enzyme was inserted in the xylose inducible vector pSBBs4S-Pxyl constructed by the LMU Munich iGEM team 2012 for expression in ''Bacillus subtilis''. This part was cloned by the iGEM Trento 2013 team for the creation of an aerobically engineered pathway for the control of fruit ripening. Further information about this part and its characterization can be found in the iGEM Trento 2013 wiki. If interested in this part please contact us. | 2-oxoglutarate oxygenase/decarboxylase is an Ethylene Forming Enzyme (EFE) from ''Pseudomonas Siringae pv'', that catalyzes Ethylene biosynthesis from 2-oxoglutarate. The enzyme was inserted in the xylose inducible vector pSBBs4S-Pxyl constructed by the LMU Munich iGEM team 2012 for expression in ''Bacillus subtilis''. This part was cloned by the iGEM Trento 2013 team for the creation of an aerobically engineered pathway for the control of fruit ripening. Further information about this part and its characterization can be found in the iGEM Trento 2013 wiki. If interested in this part please contact us. |
Revision as of 13:15, 3 October 2013
Efe+Bba_B0015 in BBa_K823024 (pXyl)
2-oxoglutarate oxygenase/decarboxylase is an Ethylene Forming Enzyme (EFE) from Pseudomonas Siringae pv, that catalyzes Ethylene biosynthesis from 2-oxoglutarate. The enzyme was inserted in the xylose inducible vector pSBBs4S-Pxyl constructed by the LMU Munich iGEM team 2012 for expression in Bacillus subtilis. This part was cloned by the iGEM Trento 2013 team for the creation of an aerobically engineered pathway for the control of fruit ripening. Further information about this part and its characterization can be found in the iGEM Trento 2013 wiki. If interested in this part please contact us.
NOTE: We used a modified WORKING version of the pSpac vector that has been sent to us from the LMU Munich 2012 team.
Toxicity and sulfur test
We measured the optical density of cells induced and non induced:
Cells were induced with 1% of xylose. The graphic shows that the induced samples (blue trace) grow slightly slower than the controls (red trace).
Taking this measures we noticed that the induced colture had a really bad and not normal smell of sulfur and methane so we performed the sulfur test with the lead acetate strips:
The induced sample has darkened much more than the not induced, that's a strange result.
Usage and Biology
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal prefix found in sequence at 9491
Illegal suffix found in sequence at 1224 - 12INCOMPATIBLE WITH RFC[12]Illegal EcoRI site found at 9491
Illegal SpeI site found at 1225
Illegal PstI site found at 1239
Illegal NotI site found at 1232
Illegal NotI site found at 9497 - 21INCOMPATIBLE WITH RFC[21]Illegal EcoRI site found at 9491
Illegal BglII site found at 319
Illegal BglII site found at 7085
Illegal BamHI site found at 2601 - 23INCOMPATIBLE WITH RFC[23]Illegal prefix found in sequence at 9491
Illegal suffix found in sequence at 1225 - 25INCOMPATIBLE WITH RFC[25]Illegal prefix found in sequence at 9491
Illegal XbaI site found at 9506
Illegal SpeI site found at 1225
Illegal PstI site found at 1239
Illegal NgoMIV site found at 17
Illegal NgoMIV site found at 4148
Illegal AgeI site found at 1070
Illegal AgeI site found at 6696
Illegal AgeI site found at 7658
Illegal AgeI site found at 8333 - 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI.rc site found at 3972
Illegal BsaI.rc site found at 5411
Illegal BsaI.rc site found at 7927
Illegal SapI site found at 2889
Illegal SapI.rc site found at 6909