Difference between revisions of "Part:BBa K1104201"

Revision as of 13:05, 2 October 2013

TrxC promoter

Introduction

TrxC promoter is controlled by OxyR (transcription factor), which is activated by ROS (Reactive Oxygen Species). An intramolecular disulfide bond between Cys199 and Cys208 will form in an OxyR transcription factor, and active OxyR molecule will bind to the binding site of TrxCp, making the following circuit turned on.

In our project: Bee. coli, we use TrxCp as the sensor of Bee. coli to sense Nosema ceranae. After Nosema ceranae enter bees' midgut, the natural immune reaction will lead to ROS released by epithelia of bees' midgut. We select several promoters that can be induced by OxyR (Part:BBa_K1104200), which is activated by ROS. One of these promoters is TrxCp.

OxyR is activator of TrxC promoter. More details about OxyR can be found on the PartRegistry page: Part:BBa_K1104200.

TrxCp

Information of TrxCp on [http://www.ecocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU0-3104 Ecocyc]

We get information of TrxCp from [http://www.ecocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU0-3104 Ecocyc],

TrxCp is regulated by σ70, and there are two TFBSs upstream for OxyR. We also did some literature study, according to the citation.

In E. coli genome, thioredoxin (trxC) will express in response to elevated H₂O₂ level. Expression of genes encoding thioredoxin (trxC) is regulated by OxyR. Oxidized OxyR binds directly to TrxCp and induce its expression.

Schematic drawing of the TrxC regulon in E. coli K12 (taken from [http://www.ecocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU0-3104 Ecocyc])

Nucleotide Sequence of TrxCp (taken from [http://www.ecocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU0-3104 Ecocyc])

OxyR TFBS1 Sequence of TrxCp (taken from [http://www.ecocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU0-3104 Ecocyc])

OxyR TFBS2 Sequence of TrxCp (taken from [http://www.ecocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU0-3104 Ecocyc])

_{Reference: Ritz, D. (January 28, 2000). Thioredoxin 2 Is Involved in the Oxidative Stress Response in Escherichia coli. Journal of Biological Chemistry, 275, 4, 2505-2512.}

We strimmed trxC coding out of the sequence on [http://www.ecocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU0-3104 Ecocyc], and only take the part including 2 OxyR TFBSs and TrxCp region.

Usage and Biology

We designed circuit fighting against Nosema ceranae. After Nosema ceranae infected midgut cells of bees, and Bee. coli should sense the pathogen first before the following circuit(fighting against Nosema ceranae)is triggered, and substance such as Defensin (Part:BBa_K1104300), Abaesin (Part:BBa_K1104301) (more details on [http://2013.igem.org/Team:NYMU-Taipei/Project/Inhibition/Killing Killing Nosema] page) in the following circuit will express.

Besides, in order to enhance the strength of TrxCp, we added a device (more details on [http://2013.igem.org/Team:NYMU-Taipei/Project/Inhibition/Sensor Sensing Nosema] page).

TrxCp-strenthening device

Related Parts

Part:BBa_K1104241: TrxCp+E0840, reporter with GFP for promoter testing.
Part:BBa_K1104202: HemHp, another OxyR-induced promoter.

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
COMPATIBLE WITH RFC[1000]

@@ Line 19: / Line 19: @@
 We also did some literature study, according to the citation.
-In ''E. coli'' genome, thioredoxin(trxC) will express in response to elevated H<sub>2</sub>O<sub>2</sub> level. Expression of genes encoding thioredoxin(trxC)  is regulated by OxyR. Oxidized OxyR binds directly to TrxCp and induce its expression.
+In ''E. coli'' genome, thioredoxin (trxC) will express in response to elevated H<sub>2</sub>O<sub>2</sub> level. Expression of genes encoding thioredoxin (trxC)  is regulated by OxyR. Oxidized OxyR binds directly to TrxCp and induce its expression.
-[[File: NYMU_ptrxC.png|frame|center|Schematic drawing of the TrxC regulon in ''E. coli'' K12 (taken from [http://www.ecocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU0-3104 Ecocyc])]][[File: NYMU_ecoT.png|frame|left|Nucleotide Sequence of TrxCp(taken from [http://www.ecocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU0-3104 Ecocyc])]]
+[[File: NYMU_ptrxC.png|frame|center|Schematic drawing of the TrxC regulon in ''E. coli'' K12 (taken from [http://www.ecocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU0-3104 Ecocyc])]][[File: NYMU_ecoT.png|frame|left|Nucleotide Sequence of TrxCp (taken from [http://www.ecocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU0-3104 Ecocyc])]]
 {|
-|[[File: NYMU_ecoT1.png|frame|center|OxyR TFBS1 Sequence of TrxCp(taken from [http://www.ecocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU0-3104 Ecocyc])]]
+|[[File: NYMU_ecoT1.png|frame|center|OxyR TFBS1 Sequence of TrxCp (taken from [http://www.ecocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU0-3104 Ecocyc])]]
-|[[File: NYMU_ecoT2.png|frame|center|OxyR TFBS2 Sequence of TrxCp(taken from [http://www.ecocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU0-3104 Ecocyc])]]
+|[[File: NYMU_ecoT2.png|frame|center|OxyR TFBS2 Sequence of TrxCp (taken from [http://www.ecocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU0-3104 Ecocyc])]]
 |}
 :::::<sub>Reference: Ritz, D. (January 28, 2000). Thioredoxin 2 Is Involved in the Oxidative Stress Response in Escherichia coli. Journal of Biological Chemistry, 275, 4, 2505-2512.</sub>