Difference between revisions of "Part:BBa K1111007:Design"

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===References===
 
===References===
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MMP2 CDS ordered in a plasmid from plasmid.med.harvard.edu, blasted against NCBI sequence for MMP2.
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Backbone from Cambridge 2007 part BBa_I746908

Revision as of 19:17, 1 October 2013


MMP2 under the control of the pBAD/araC arabinose inducible promoter


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 1205
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 1645
    Illegal BamHI site found at 1144
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 979
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI site found at 961


Design Notes

The construct was obtained by performing a Gibson reaction on the BBa_I746808 part and MMP2-containing plasmid, after an overlap was added by PCR reaction to both of the elements. For the MMP2 CDS, the PCR not only added an overlap complementary to the iGEM part sequence but also a His tag at the beginning of the protein CDS and a 30bp linker at the end of it, so that it would fold properly when expressed followed by the superfolder GFP sequence.

Source

The MMP2 CDS comes from the species Homo sapiens.

References

MMP2 CDS ordered in a plasmid from plasmid.med.harvard.edu, blasted against NCBI sequence for MMP2. Backbone from Cambridge 2007 part BBa_I746908