Difference between revisions of "Part:BBa K1065204:Design"

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===Source===
 
===Source===
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The coding sequence of EFE gene was taken from <I>Pseudomonas syringae</I> pv. <I>phaseolicola</I> PK2.
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This enzyme was firstly purified from Pseudomonas Siringae pv. phaseolicola PK2, a 2-oxoglutarate-dependent ethylene producing bacterium [1]. The CDS has been optimized for both E.coli and B.subtilis. We decided to include an RBS sequence too.  
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We used a CDS optimized for both ''E. coli'' and'' B. subtilis'' that was synthesized by Genescript.
  
 
===References===
 
===References===

Revision as of 09:53, 1 October 2013


Efe+Bba_B0015 in BBa_K823024 (pXyl)


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal prefix found in sequence at 5996
    Illegal suffix found in sequence at 1224
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 5996
    Illegal SpeI site found at 1225
    Illegal PstI site found at 1239
    Illegal NotI site found at 1232
    Illegal NotI site found at 6002
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 5996
    Illegal BglII site found at 319
    Illegal BamHI site found at 5980
    Illegal XhoI site found at 2234
    Illegal XhoI site found at 3152
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal prefix found in sequence at 5996
    Illegal suffix found in sequence at 1225
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal prefix found in sequence at 5996
    Illegal XbaI site found at 6011
    Illegal SpeI site found at 1225
    Illegal PstI site found at 1239
    Illegal NgoMIV site found at 17
    Illegal NgoMIV site found at 3116
    Illegal NgoMIV site found at 4255
    Illegal AgeI site found at 1070
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 4079
    Illegal SapI.rc site found at 1828


Design Notes

Design Notes

The construct has been builded with a standard assembly. We firstly optimized the codons of EFE gene for both B. subtilis and E. coli and then synthesized the gene with an RBS sequence upstream of the start codon. We decided to include in the CDS two restriction sites (NgoMIV and AgeI) in order to allow people to use the Freiburg assembly.

GAATTCGCGGCCGCTTCTAGATAAGGAGGAACTACTATGGCCGGCACC...

...TCGACCGGTTAATACTAGTAGCGGCCGCTGCAG

Source

The coding sequence of EFE gene was taken from Pseudomonas syringae pv. phaseolicola PK2. We used a CDS optimized for both E. coli and B. subtilis that was synthesized by Genescript.

References