Difference between revisions of "Part:BBa K1077007"

Revision as of 03:42, 28 September 2013

J23100 fim switch b0034 amilCP ON orientation

An engineered fim switch is capable of flipping and producing protein

fig 1. NEB 10-beta E. coli, which lack the native fim switch (fimS) and know fim recombinases, were co-transformed with K1077003 and K1077002. When induced with aTc and grown for overnight on the left, no GFP is produced. When induced with HSL and grown overnight on the right, GFP is produced.

The fim transcriptor is capable of changing states completely and unidirectionally fig. 2 NEB 10-beta E. coli, which lack the native fim switch (fimS), were co-transformed with either constitutive hbiF or fimE and BBa_K1077007 (J23100 fim switch, ON orientation). E. coli expressing hbiF recombnase constitutively displayed a deep blue phenotype (A). This is consistent with hbiF’s previously observed functionality of catalyzing the inversion of fimS from the OFF to ON orientation. This is consistent with hbiF’s previously observed functionality of catalyzing the inversion of fimS from the OFF to ON orientation.

The state of the switch was assayed by using an asymmetric digest assay. There are two hincII sites located within the K1077007 switch, one of which changes position depending on the state of the switch. The result is that when the switch is in the ON position, a 870bp, 273bp, and 248bp band is produced. When the switch is in the OFF position, a 680bp, 473bp, and 273bp band is produced. The digest assay was quantified using densitometry, showing greater than 95% of the switch in the desired state (ON when co transformed with constitutive hbiF and OFF when co transformed with constitutive fimE).

An inducible recombinase generator and engineered fimS make a fully functional fim transcriptor

NEB 10-beta E. coli, which lack the native fim switch (fimS) and know fim recombinases, were co-transformed with K1077007 and K1077002 Stock HSL was 100uM Stock aTc was 4.32mM From left to right: uninduced, .5uL stock HSL, 5uL HSL, 15uL HSL, 35uL HSL, 60uL HSL, 100uL HSL, 70uL stock aTc, 90uL stock aTc. Uninduced (referred to as A), 35uL HSL (referred to as B), and 90uL aTc (referred to as C) samples were washed 3 times with PBS and reinoculated without inducer, with 35uL stock HSL, and 90uL stock aTc; shown below: Left to right: A,B,C samples reinoculated with 35uL stock HSL; A,B,C samples reinoculated with aTc, A,B,C samples reinoculated no inducer

Conclusions:

We engineered the fim switch by replacing the native promoter with another promoter, namely J23100, and showed that it can flip completely in both directions and function as expected. Additionally, we submitted the switch halves separately so that other teams can flip whatever part they desire, resulting in a complete fim transcriptor system. We improved upon several natural and engineered biobrick parts. We demonstrated that the fim switch can function as a reliable and efficient biological transistor, or “transcriptor”. Future engineers can utilize this switch for tight control of output or to store a state within DNA itself. The prospect of combining this transcriptor with the ones previously described is tantalizing in that it should enable a larger rewritable DNA storage than is currently possible. Additionally, having more switches that respond to independent sets of recombinases allows for more complex circuits to be engineered.

Sources:

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Sequence and Features