Difference between revisions of "Part:BBa K1062001"
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| + | This part is a guide RNA (gRNA) that targets GFP, when bound to Cas9. It also contains a cleavage site recognized by the Csy4 enzyme which allows it to be cleaved from neighboring DNA/RNA. | ||
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<span class='h3bb'>Sequence and Features</span> | <span class='h3bb'>Sequence and Features</span> | ||
<partinfo>BBa_K1062001 SequenceAndFeatures</partinfo> | <partinfo>BBa_K1062001 SequenceAndFeatures</partinfo> | ||
| + | ==='''Usage and Biology'''=== | ||
| + | In both of our projects, we used gRNAs and dCas9 as: | ||
| + | 1) To specifically target and repress the "virulence gene" (we used flourescent proteins as a proof of concept) in our conjugation project | ||
| + | 2) Improve past circuits with better decision making by using dCas9 instead of traditional repressors. | ||
| + | However, the gRNA for GFP is not used in the conjugation project since the green fluorescent protein is to represent the donor strain of the project. | ||
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| + | [[File:Synthetic Circuit.jpg]] | ||
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| + | =='''Conjugation Project'''== | ||
| + | |||
| + | =='''Synthetic Circuit'''== | ||
<!-- Uncomment this to enable Functional Parameter display | <!-- Uncomment this to enable Functional Parameter display | ||
===Functional Parameters=== | ===Functional Parameters=== | ||
| − | <partinfo> | + | <partinfo>BBa_K1062000 parameters</partinfo> |
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Revision as of 17:57, 13 September 2013
Guide RNA (gRNA) target for RFP
This part is a guide RNA (gRNA) that targets GFP, when bound to Cas9. It also contains a cleavage site recognized by the Csy4 enzyme which allows it to be cleaved from neighboring DNA/RNA.
Sequence and Features
Assembly Compatibility:
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
Usage and Biology
In both of our projects, we used gRNAs and dCas9 as: 1) To specifically target and repress the "virulence gene" (we used flourescent proteins as a proof of concept) in our conjugation project 2) Improve past circuits with better decision making by using dCas9 instead of traditional repressors. However, the gRNA for GFP is not used in the conjugation project since the green fluorescent protein is to represent the donor strain of the project.
