Difference between revisions of "Part:BBa J45001:Design"

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===Design Notes===
 
===Design Notes===
−
#no cut restriction enzyme cut sites in coding region
+
#no restriction enzyme cut sites in coding region
 
#changed natural stop codon to TAA TAA
 
#changed natural stop codon to TAA TAA
 
#primer design
 
#primer design

Revision as of 22:01, 8 June 2006


SAM:salicylic acid carboxyl methyltransferase; converts salicylic acid to methyl salicylate (winter


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 577
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal XhoI site found at 901
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 421
    Illegal NgoMIV site found at 425
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI site found at 471
    Illegal SapI.rc site found at 75


Design Notes

  1. no restriction enzyme cut sites in coding region
  2. changed natural stop codon to TAA TAA
  3. primer design
    • forward = 5'- GTT TCT TCG AAT TCG CGG CCG CTT CTA GAG ATG ACA AAA CAA ACA CAA AAG -3'
    • reverse = 5'- GTT TCT TCC TGC AGC GGC CGC TAC TAG TAT TAT TAG TTT CTT TTT GCT TG -3'

Source

  1. GenBank Accession No. AF515284
  2. Species = Antirrhinum Majus, Snapdragon

References

  1. corresponding author: Natalia Dudareva
  2. Pubmed: PMID: 12361714
  3. Abstract for SAMT enzyme:
    1. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12361714&dopt=Abstract
  4. Wiki Link:
    1. http://openwetware.org/wiki/IGEM:MIT/2006/Notebook/2006-6-6