Difference between revisions of "Part:BBa K782088"

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Single binding site is combined from 18 base pairs specificly recognised by [https://parts.igem.org/wiki/index.php?title=Part:BBa_K782006 TALB].  
 
Single binding site is combined from 18 base pairs specificly recognised by [https://parts.igem.org/wiki/index.php?title=Part:BBa_K782006 TALB].  
Binding sites are constructed in alternating setup. Besides TALB:VP16 binding sites construct also contain ten alternating TALC:VP16 binding sites, which we didn't use, since TALC regulator wasn't working properly.
+
Binding sites are constructed in alternating setup. Besides TALB binding sites construct also contain ten alternating TALC binding sites, which we didn't use, since TALC regulator wasn't working properly.
  
 
Single binding site sequence for TALB: TCTTCCGTTTCCACATCT
 
Single binding site sequence for TALB: TCTTCCGTTTCCACATCT

Revision as of 11:21, 26 September 2012

10x[TALB] operator_minimal promoter

  • TALB and TALC labels represents TAL effector 1297 and 1259 from zebrafish experiments (Sander et al., 2011).

Introduction

TAL effectors (TALEs) are able to specifically bind to the DNA by recognizing base pairs on a DNA molecule. With TAL regulators we are able to control expression of a desired gene. Efficient transcription control can be achieved by binding of multiple TAL regulators upstream of promoter.

Our construct contain ten TALB binding sites and minimal promoter.

Minimal promotor is taken from pGL4 vector series (promotor is described [http://www.promega.com/~/media/files/resources/protocols/technical%20manuals/0/pgl4%20luciferase%20reporter%20vectors%20protocol.pdf?la=en here] on the page 18).

Single binding site is combined from 18 base pairs specificly recognised by TALB. Binding sites are constructed in alternating setup. Besides TALB binding sites construct also contain ten alternating TALC binding sites, which we didn't use, since TALC regulator wasn't working properly.

Single binding site sequence for TALB: TCTTCCGTTTCCACATCT



10xB-pMIN.png

Figure 1: Schematic representation of the construct.


Characterization

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 394
    Illegal NgoMIV site found at 754
    Illegal AgeI site found at 259
    Illegal AgeI site found at 594
    Illegal AgeI site found at 619
    Illegal AgeI site found at 954
  • 1000
    COMPATIBLE WITH RFC[1000]