Difference between revisions of "Part:BBa K863111"

Revision as of 10:53, 26 September 2012

Cellulose binding domain of C. cellulovorans cellulose binding protein gene (Freiburg-Standard)

Cellulose binding Domain of Clostridium cellulovorans [http://www.ncbi.nlm.nih.gov/nuccore/M73817 cellulose binding protein gene (cbp A)](CBDclos) in Freiburg-standard.

The CBDclos is an N-terminal domain quite close to the start of the protein-sequence (Figure 1). The NCBI-BLAST identified 92 amino acids (AS)(276 bases; green bar) as the protein domain. 12 bases (4 AS) were taken as conserved sequence upstream and 6 bases (2AS) downstream of the domain to secure natural folding of the domain.

Figure 1: protein-Blast of the Clostridium cellulovorans [http://www.ncbi.nlm.nih.gov/nuccore/M73817 cellulose binding protein gene (cbp A)]

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
INCOMPATIBLE WITH RFC[25]
Illegal NgoMIV site found at 4
Illegal AgeI site found at 310
1000
COMPATIBLE WITH RFC[1000]

@@ Line 4: / Line 4: @@
 Cellulose binding Domain of Clostridium cellulovorans [http://www.ncbi.nlm.nih.gov/nuccore/M73817 cellulose binding protein gene (cbp A)](CBDclos) in Freiburg-standard.
-The CBDclos is an N-terminal domain quite close to the start of the protein-sequence (Figure 1). The NCBI-BLAST identified 92 amino acids (AS)(276 bases; green bar) as the protein domain. 12 bases (4 AS) were taken as conserved sequence upstream and downstream of the domain to secure natural folding of the domain.
+The CBDclos is an N-terminal domain quite close to the start of the protein-sequence (Figure 1). The NCBI-BLAST identified 92 amino acids (AS)(276 bases; green bar) as the protein domain. 12 bases (4 AS) were taken as conserved sequence upstream and 6 bases (2AS) downstream of the domain to secure natural folding of the domain.
 [[image:Bielefeld2012_Cellubp.jpg|800px|thumb|center|Figure 1: protein-Blast of the Clostridium cellulovorans [http://www.ncbi.nlm.nih.gov/nuccore/M73817 cellulose binding protein gene (cbp A)]]]