Difference between revisions of "Part:BBa K802001"

Revision as of 11:35, 24 September 2012

Dispersin generator for B. subtilis

This part associates the Bacillus subtilis Constitutive Promoter (PVeg) with the dispersin B gene (DspB).The DspB gene codes for an enzyme which catalyzes the hydrolysis of the extracellular matrix produced by Gram-negative bacteria.

Characterization

Following results show that this part allows B. subtilis 168 strains to scatter the S. aureus and epidermidis cells in a biofilm.

In our plasmid collection, this part is named pBK33 in the backbone Chloramphenicol and pBKH41 in the shuttle vector E. coli – B. subtilis. The corresponding negative control is the shuttle vector (pBKH26 in our collection). We worked with the plasmid pBKH41 for the tests and we tried two different genetic backgrounds: the strain NM522 to make test in E. coli and the strain 168 to make test in Bacillus subtilis.

Confocal Microscopy

Biofilms are formed by the S. aureus fluorescent strain RN4220 pALC2084 expressing GFP. It is a nonmotile laboratory strain, used to form biofilms in 96-well microscopic-grade microtiter plate.

Bacillus subtilis 168 transformed by pBKH41 (DspB in in the shuttle vector) and by pBKH26 (the shuttle vector without gene to have a negative control) were grown on LB medium supplemented with erythromycin (15µg/mL).
After 24h of culture at 30°C without shaking, biofilms were observed under a time-lapse confocal microscope. For each well, two observations were made : one before washing the biofilm and one after washing (i.e. after removing the supernatant).
Cells expressing GFP were excited at 488 nm with an argon laser, and fluorescent emission was collected on a detector in the range of 500-600 nm using an oil-immersion objective with a magnification of 63x. The overall three-dimensional structures of the biofilms were scanned from the solid surface to the interface with the growth medium, using a step of 1 µm.
The 3D constructions were obtained with IMARIS software.

-Blank : it is a non treated S. aureus biofilm (just with growth medium).
-Negative control : it is a S. aureus biofilm treated by B. subtilis containing the shuttle vector without the DspB gene.
-Strain with our part : it is a S. aureus biofilm treated by B. subtilis containing the part BBa_K802001 in the shuttle vector.




S.aureus biofilm not treated (Blank)







S.aureus biofilm treats by the strain with the shuttle vector without DspB gene (Negativ control)







S.aureus biofilm treats by the strain with the part



Conclusion:
With these observations, we concluded that the part allowed to scatter a S. aureus biofilm after washing. The bindings between the S. aureus cells inside the biofilm are affected, so that the biofilm can be easily eliminated after washing.




Statistic analysis:


In order to quantify our results, we made a statistical analysis with the MATLAB software. Different parameters [1] were used to quantify the biofilm, particularly :

- Total Biovolume (µm³) : it corresponds to the overall volume of the biofilm and also allows to have an estimation of the biomass in the biofilm.
- Substratum coverage (%) : it corresponds to the area coverage in the first image of the stack (i.e. at the substratum). It is a good mean to estimate how efficiently the substratum is colonized by bacteria of the population.

The same three cases as previously are analysed.









Conclusion:
These statistical results demonstrate that the S. aureus biofilm treated by the B. subtilis with the part is significantly reduced after washing. The blank and the negative control prove that washing doesn't affect the biofilm when the cells are not first scattered by the action of dispersin.

[1]Quantification of biofilm structures by the novel computer program COMSTAT. Heydorn A, Nielsen AT, Hentzer M, Sternberg C, Givskov M, Ersbøll BK, Molin S.Molecular Microbial Ecology Group, Department of Microbiology, Technical University of Denmark, DK-2800 Lyngby, Denmark.July 2000.





SDS-PAGE Protein gel


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Usage and Biology

This part was designed to be used in Bacillus strains in order to scatter a Staphyloccocus aureus biofilm.
Possible applications include biofilm treatment in medical domain, oil or food-processing industries, using this scattering property to eliminate harmful biofilms.


Sequence and Features




Assembly Compatibility:

• 10
  COMPATIBLE WITH RFC[10]
• 12
  COMPATIBLE WITH RFC[12]
• 21
  COMPATIBLE WITH RFC[21]
• 23
  COMPATIBLE WITH RFC[23]
• 25
  INCOMPATIBLE WITH RFC[25]

  Illegal NgoMIV site found at 675
  
• 1000
  COMPATIBLE WITH RFC[1000]