Difference between revisions of "Part:BBa K818000"

Revision as of 10:37, 21 September 2012

Integration vector for Bacillus subtilis derived from pSac-Cm

This plasmid was derived from pSac-Cm by insertion of biobrick compatible restriction sites (prefixes and suffixes), a terminator (BBa_B0015) after the suffixes sequences, and red fluorescent protein sequence (RFP) in between the prefix and suffix in its multiple cloning sites (MCS). New biobricks can be inserted into this vector by replacement of the RFP biobrick, and selection of the white colonies. This backbone has a multi host replication origin and replicates in E. coli and Bacillus subtilis. The plasmid is designed to integrate a cloned insert into the B. subtilis chromosome via double recombination between plasmid and chromosomal sacA sequences. For more info about this biobrick and its usage in B. subtilis, please visit: [http://2012.igem.org/Team:Groningen/OurBiobrick Groningen 2012 BioBrick page]

Usage and Biology

This plasmid works well in E. coli and B. subtilis. This plasmid can be used as cloning tool in E. coli by selecting the white colonies from the red colonies after transformation (the plasmid in the red colonies has no insert; the RFP sequence is not replaced by the insert).

red-white colonies

Sequence and Features

Assembly Compatibility:

10
INCOMPATIBLE WITH RFC[10]
Plasmid lacks a prefix.
Plasmid lacks a suffix.
Illegal EcoRI site found at 5207
Illegal XbaI site found at 5218
Illegal SpeI site found at 1
Illegal PstI site found at 12
12
INCOMPATIBLE WITH RFC[12]
Plasmid lacks a prefix.
Plasmid lacks a suffix.
Illegal EcoRI site found at 5207
Illegal SpeI site found at 1
Illegal PstI site found at 12
21
INCOMPATIBLE WITH RFC[21]
Plasmid lacks a prefix.
Plasmid lacks a suffix.
Illegal EcoRI site found at 5207
Illegal BamHI site found at 180
23
INCOMPATIBLE WITH RFC[23]
Plasmid lacks a prefix.
Plasmid lacks a suffix.
Illegal EcoRI site found at 5207
Illegal XbaI site found at 5218
Illegal SpeI site found at 1
Illegal PstI site found at 12
25
INCOMPATIBLE WITH RFC[25]
Plasmid lacks a prefix.
Plasmid lacks a suffix.
Illegal EcoRI site found at 5207
Illegal XbaI site found at 5218
Illegal SpeI site found at 1
Illegal PstI site found at 12
Illegal NgoMIV site found at 4124
1000
INCOMPATIBLE WITH RFC[1000]
Plasmid lacks a prefix.
Plasmid lacks a suffix.
Illegal BsaI site found at 2051
Illegal SapI.rc site found at 3133

@@ Line 2: / Line 2: @@
 <partinfo>BBa_K818000 short</partinfo>
-This plasmid was derived from pSac-Cm by insertion of biobrick compatible restriction sites (prefixes and suffixes), a terminator (BBa_B0015) after the suffixes sequences, and red fluorescent protein sequence (RFP) in between the prefix and suffix in its multiple cloning sites (MCS). New biobricks can be inserted into this vector by replacement of the RFP biobrick, and selection of the white colonies. This backbone has a multi host replication origin and replicates in ''E. coli'' and ''Bacillus subtilis''. The plasmid is designed to integrate a cloned insert into the B. subtilis chromosome via double recombination between plasmid and chromosomal sacA sequences. For more info about this biobrick and its usage in B. subtilis, please visit: [http://2012.igem.org/Team:Groningen iGEM Groningen 2012 team page]
+This plasmid was derived from pSac-Cm by insertion of biobrick compatible restriction sites (prefixes and suffixes), a terminator (BBa_B0015) after the suffixes sequences, and red fluorescent protein sequence (RFP) in between the prefix and suffix in its multiple cloning sites (MCS). New biobricks can be inserted into this vector by replacement of the RFP biobrick, and selection of the white colonies. This backbone has a multi host replication origin and replicates in ''E. coli'' and ''Bacillus subtilis''. The plasmid is designed to integrate a cloned insert into the B. subtilis chromosome via double recombination between plasmid and chromosomal sacA sequences. For more info about this biobrick and its usage in B. subtilis, please visit: [http://2012.igem.org/Team:Groningen/OurBiobrick Groningen 2012 BioBrick page]
 ===Usage and Biology===