Difference between revisions of "Part:BBa K801999:Design"

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<partinfo>BBa_K801999 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K801999 SequenceAndFeatures</partinfo>
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'''Keywords:'''<br>
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<!--keyword 1, keyword 2, keyword 3, keyword 4, keyword 5-->
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<br>'''Keywords:'''
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'''Abbreviations:'''
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<!--keyword_1, keyword_2, keyword_3, keyword_4, keyword_5-->
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<!--used abbreviation 1 = provide full name of used abbreviations 1-->
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<!--used abbreviation 2 = provide full name of used abbreviations 2-->
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<br>'''Abbreviations:'''
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<!--*used_abbreviation_1 = full_name_of_used_abbreviations_1-->
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<!--*used_abbreviation_2 = full_name_of_used_abbreviations_2-->
  
 
===Design Notes===
 
===Design Notes===
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'''Other versions of this BioBrick:'''<br>
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<!--The BioBrick Bba_??? encodes the the same functionality but instead...<br>-->
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'''Other versions of this BioBrick:'''
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<!--*The BioBrick Bba_??? encodes ???.-->
  
 
'''Cloning details:'''<br>
 
'''Cloning details:'''<br>
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<!--Part was designed in RFC10/RFC23/RFC25<br>-->
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<!--*Part was designed in RFC10/RFC23/RFC25-->
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<!--Mutation C889G to delete XbaI restriction site<br>-->
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<!--*Mutation C889G to delete XbaI restriction site-->
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<!--Part was truncated upstream/downstream compared to template in order to ???<br>-->
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<!--*Part was truncated upstream/downstream compared to template in order to ???-->
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<!--The correctness of part was checked by sequencing" or "... was not yet checked by sequencing<br>-->
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<!--*The correctness of the part was checked by sequencing./The correctness of the part was checked by test digestion using ?enzyme1? and ?enzyme2?/The correctness of the part was not chekced.-->
  
 
'''Protein coding:'''<br>
 
'''Protein coding:'''<br>
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<!--The BioBrick does not encode a protein" or "Name of gene product [Nucleotide 1 to ???]<br>-->
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<!--*The BioBrick does not encode a protein" or ?Name_of_gene_product? [Nucleotide 1 to ???]-->
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<!--The protein has the amino acid replacements Cys59Tyr in order to...<br>-->
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<!--*The protein has the amino acid replacements ???99??? to ???.-->
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<!--The protein encoded is posttranslationally modified...<br>-->
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<!--*The protein encoded is posttranslationally modified by ???.-->
  
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'''Enzymatic activity:'''<br>
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'''Enzymatic activity:'''
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<!--none/EC-number ?.?.?.?<br>-->
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<!--none/EC-number ?.?.?.?-->
  
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'''Cytotoxicity:'''<br>
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'''Cytotoxicity:'''
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<!--none/not known/cytotoxic for ''organim name''<br>-->
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<!--none/not known/cytotoxic for ''organim name''-->
  
 
===Source===
 
===Source===

Revision as of 20:48, 11 September 2012

Test page for standardized BioBrick part descriptions


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Keywords:


Abbreviations:

Design Notes

Other versions of this BioBrick:

Cloning details:

Protein coding:

Enzymatic activity:

Cytotoxicity:

Source

Source:

Organism:

References

Literature references:

Seqeuence references:

Structure reference:


TUM12-Test page1.png


Test page for standardized BioBrick part descriptions


Keywords: fluorescent, reporter, chromophore, luminescence, bioluminescence, photoprotein


Used abbreviations:

  • GFP = Green Fluorescent Protein

Design Notes

Other versions of this BioBrick:

  • The BioBrick BBa_I757008 encodes a yellow fluorescent protein (mVenus) derived from GFP.
  • The BioBrick BBa_I757008 encodes GFP in RFC25 for protein fusions.

Cloning details:

  • Part was designed in RFC10.
  • Mutation G381A to delete XbaI restriction site
  • The correctness of the part was checked by sequencing.

Protein coding:

  • Green Fluorescent Prtein [Nucleotide 1 to 714]
  • The protein has the amino acid replacements Ser65Thr in order to increased fluorescence, photostability, and to shift the major excitation peak to 488 nm. (see Heim et all., 1995)
  • The protein encoded is posttranslationally modified by a cross-link between Ser65 and Gly67 to form the chromophor.

Enzymatic activity: none

Cytotoxicity: none

Source

Source:

  • Amplified from plasmid: pSB1C3-GFP-generator, provided by A. Skerra, TU Munich, Germany

Forward Primer:
5'- ??? - 3'
Reverse Primer:
5'- ??? - 3'


Organism:

  • Genesequence derived from Aequorea victoria
  • Codonoptimized for Escherichia coli

References

Literature references:

  • [http://www.ncbi.nlm.nih.gov/pubmed/20010584 Pubmed: Prasher, 1995: Using GFP to see the light.(Review)]
  • [http://www.ncbi.nlm.nih.gov/pubmed/7854443: Heim, 1995: Improved green fluorescence.(Reference for Chromophor)]

Seqeuence references:

  • [http://www.ncbi.nlm.nih.gov/nuccore/X83959.1 GeneBank: A.victoria mRNA for green fluorescent protein (ID:gfp1)]
  • [http://www.ebi.ac.uk/interpro/IEntry?ac=IPR011584 Interpro: Green fluorescent protein-related ]
  • [http://www.uniprot.org/uniprot/P42212 Uniprot: Green fluorescent protein]
  • [http://pfam.sanger.ac.uk/family/PF01353 Pfam: Green fluorescent protein]

Structure reference:

  • [http://www.rcsb.org/pdb/explore/explore.do?structureId=1EMA PDB: Green Fluorescent Protein from Aequorea victoria]