Difference between revisions of "Part:BBa K649401:Experience"
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[[Image:Arg_box_on_1C3.png|thumb|right|500px|Urea concentration in growth media 1 hour after IPTG induction.<br />
 
[[Image:Arg_box_on_1C3.png|thumb|right|500px|Urea concentration in growth media 1 hour after IPTG induction.<br />
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This work is done by Natsuki Kubo.]]
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This work was done by Natsuki Kubo.]]
  
 
'''[Sample]'''<br />
 
'''[Sample]'''<br />
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A single colony of cells transformed with engineered plasmids (mock, Ptrc-rocF or Ptrc-rocF-Arg box) was inoculated into 3 mL of LB with kanamycin and grown to saturation at 37℃
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A single colony of cells transformed with engineered plasmids (mock, Ptrc-rocF or Ptrc-rocF-Arg box) was inoculated into 3 mL of LB with kanamycin and chloramphenicol and grown to saturation at 37℃.
 
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'''[Discussion]'''<br />
 
'''[Discussion]'''<br />
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As a way to derepress arginine biosynthesis we introduced Arg box on our part BBa_K649401 in addition to <i>rocF</i> gene on our part [https://parts.igem.org/Part:BBa_K649301 BBa_K649301]. In this case, more urea was produced compared that when only <i>rocF</i> gene were introduced. These results show that Arg boxes are effectively derepressing arginine production by deactivating arginine repressor.
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As a way to derepress arginine biosynthesis, we introduced Arg box on our part BBa_K649401 in addition to <i>rocF</i> gene on our part [https://parts.igem.org/Part:BBa_K649301 BBa_K649301]. In this case, more urea was produced compared to that when only <i>rocF</i> gene was introduced. These results show that Arg boxes are effectively derepressing arginine production by deactivating the arginine repressor.
  
 
===User Reviews===
 
===User Reviews===

Revision as of 05:26, 29 October 2011

This experience page is provided so that any user may enter their experience using this part.
Please enter how you used this part and how it worked out.

Applications of BBa_K649401

Urea concentration in growth media 1 hour after IPTG induction.
This work was done by Natsuki Kubo.

[Sample]
E.coli strains used in this study is MG1655.

Plasmids transformed into E.coli in this study are shown in TABLE 1.

TABLE 1. Expression plasmids used for Charcterization of rocF and Arg box
designation pSB3K3 pSB6A1
mock PlacIQ Alcohol-dehydrogenase(promoter-less)
rocF Ptrc-rocF Alcohol-dehydrogenase(promoter-less)
rocF + Arg box Ptrc-rocF Arg box

Strain MG1655 was transformed with either mock, rocF or rocF + Arg box. As shown in Table 1, rocF gene was introduced on pSB3K3 (BBa_K649301) and Arg box(BBa_K649401) was introduced on pSB6A1 respectively.


[Method]
Preparation of samples for urea concentration assay

  1. A single colony of cells transformed with engineered plasmids (mock, Ptrc-rocF or Ptrc-rocF-Arg box) was inoculated into 3 mL of LB with kanamycin and chloramphenicol and grown to saturation at 37℃.
  2. The saturated culture was diluted 50-fold, grown till the log phase (OD600 = 0.5).
  3. The culture was induced with 1 mM IPTG at 37 ℃ for 1 hour.
  4. 1.5 mL of culture was centrifuged at 9,000 rpm for 1 minute and the supernatant fluid was used as a sample for urea concentration assay.

Urea concentration assay

  1. 10 µL of the supernatant fluid from each sample, 10 µL blank(LB),and 10 µL standard (10 mg/dL urea LB) were transferred to wells of clear bottom 96-well plates.
  2. 200 µL working reagent for coloring reaction from DIUR-500 -QuantiChrom™ Urea Assay Kit was added and the wells were taped lightly to mix.
  3. The mixture was incubated for 20 minutes at room temperature.
  4. Optical density at 450 nm was read and urea concentration (mg/dL) of the sample was calculated as
    Kit_equation.png
    ODSAMPLE, ODBLANK and ODSTANDARD are OD450 values of sample, standard and blank, respectively.

    5. Each sample was assayed in triplicate and the averatge of three values were calculataed.

[Discussion]
As a way to derepress arginine biosynthesis, we introduced Arg box on our part BBa_K649401 in addition to rocF gene on our part BBa_K649301. In this case, more urea was produced compared to that when only rocF gene was introduced. These results show that Arg boxes are effectively derepressing arginine production by deactivating the arginine repressor.

User Reviews

UNIQ9cd280b733d9dce1-partinfo-00000000-QINU UNIQ9cd280b733d9dce1-partinfo-00000001-QINU