Difference between revisions of "Part:BBa K542009:Experience"
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====Sedimentation by Antigen 43====
 
====Sedimentation by Antigen 43====
 
<i>E. coli</i> DH5α cells expressing BBa_K542009 were monitored for sedimentation and compared to sedimentation of uninduced cells.
 
<i>E. coli</i> DH5α cells expressing BBa_K542009 were monitored for sedimentation and compared to sedimentation of uninduced cells.
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======Materials and Methods======
+
=====Materials and Methods=====
 
Overnight cultures <i>E. coli</i> DH5α containing BBa_K542009 or BBa_J04500 (blank control) were grown with the appropriate antibiotics. Three 50 mL LB cultures – BBa_J04500 (control), BBa_K542009 (induced), and BBa_K542009 (uninduced) – with the appropriate antibiotics were inoculated to an OD<sub>600</sub> of 0.1 and incubated at 37°C with shaking.
 
Overnight cultures <i>E. coli</i> DH5α containing BBa_K542009 or BBa_J04500 (blank control) were grown with the appropriate antibiotics. Three 50 mL LB cultures – BBa_J04500 (control), BBa_K542009 (induced), and BBa_K542009 (uninduced) – with the appropriate antibiotics were inoculated to an OD<sub>600</sub> of 0.1 and incubated at 37°C with shaking.
 
<br><br>
 
<br><br>
 
At OD<sub>600</sub> of 0.4-0.6, the cultures were induced (excluding one of the BBa_K542009 cultures) with IPTG to a concentration of 0.001% and growth was monitored to a final OD<sub>600</sub> of 1. The cells were centrifuged at 5000 x g for 5 min and the supernatant discarded. The cells were resuspended with 5 mL of 1% PBS (with 0.15 mM NaCl) and transferred into test tubes. The cells in the test tubes were agitated and 100 µL was taken ~0.5 cm from the surface every 10 min for the first 60 min; then every hour for the next 3 hours and again at 18 hours and 18.5 hours. The samples were also subjected to OD<sub>590</sub> measurements using a microplate and the SoftMax Pro Software.
 
At OD<sub>600</sub> of 0.4-0.6, the cultures were induced (excluding one of the BBa_K542009 cultures) with IPTG to a concentration of 0.001% and growth was monitored to a final OD<sub>600</sub> of 1. The cells were centrifuged at 5000 x g for 5 min and the supernatant discarded. The cells were resuspended with 5 mL of 1% PBS (with 0.15 mM NaCl) and transferred into test tubes. The cells in the test tubes were agitated and 100 µL was taken ~0.5 cm from the surface every 10 min for the first 60 min; then every hour for the next 3 hours and again at 18 hours and 18.5 hours. The samples were also subjected to OD<sub>590</sub> measurements using a microplate and the SoftMax Pro Software.
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======Results======
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=====Results=====
 
[[image:uoflagfigure2.png|center|400px]]
 
[[image:uoflagfigure2.png|center|400px]]
 
<br><br>
 
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<br><br>
 
<br><br>
 
<b>Figure 3.</b>    Microplate readings at 590nm for samples taken from the sedimentation assay using SoftMax Pro Software. Increase in absorbance at 150 min may have been due to the aggregation of the cells on the microplate prior to taking the measurement.  
 
<b>Figure 3.</b>    Microplate readings at 590nm for samples taken from the sedimentation assay using SoftMax Pro Software. Increase in absorbance at 150 min may have been due to the aggregation of the cells on the microplate prior to taking the measurement.  
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======Conclusion======
+
=====Conclusion=====
 
There is a significant difference between the aggregation of cells with the Antigen43 construct (BBa_K542009) and the cells without the construct after 18 hours. The pLacI promoter is known to be leaky. This was illustrated by the similarity between the uninduced and induced samples (Figures 2 and 3). These experiments support the conclusion that BBa_K542009 works as expected and the induced cells exhibit sedimentation.
 
There is a significant difference between the aggregation of cells with the Antigen43 construct (BBa_K542009) and the cells without the construct after 18 hours. The pLacI promoter is known to be leaky. This was illustrated by the similarity between the uninduced and induced samples (Figures 2 and 3). These experiments support the conclusion that BBa_K542009 works as expected and the induced cells exhibit sedimentation.
  

Revision as of 19:17, 28 September 2011

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Please enter how you used this part and how it worked out.

Applications of BBa_K542009

Datasheet for BBa_K542009 in E. coli strain BL21 (DE3).

Uoflag43datasheet.png

The Peking 2010 iGEM team characterized Antigen 43 (AG43) using a T7 promoter expression system in E. coli BL21(DE3) strain and submitted the coding sequence with no promoter or ribosome binding site (RBS) to the parts registry (BBa_K364007). In order for AG43 to be used, BBa_K542009 was assembled to include the required regulatory elements. The pLacI promoter and RBS were added to the coding sequence for AG43.

Construct

Part Number: BBa_K542009

Uoflagfigure1.png



Figure 1. BBa_K542009. The inductive aggregation construct was made by assembling BBa_J04500 and BBa_K346007.

Sedimentation by Antigen 43

E. coli DH5α cells expressing BBa_K542009 were monitored for sedimentation and compared to sedimentation of uninduced cells.

Materials and Methods

Overnight cultures E. coli DH5α containing BBa_K542009 or BBa_J04500 (blank control) were grown with the appropriate antibiotics. Three 50 mL LB cultures – BBa_J04500 (control), BBa_K542009 (induced), and BBa_K542009 (uninduced) – with the appropriate antibiotics were inoculated to an OD600 of 0.1 and incubated at 37°C with shaking.

At OD600 of 0.4-0.6, the cultures were induced (excluding one of the BBa_K542009 cultures) with IPTG to a concentration of 0.001% and growth was monitored to a final OD600 of 1. The cells were centrifuged at 5000 x g for 5 min and the supernatant discarded. The cells were resuspended with 5 mL of 1% PBS (with 0.15 mM NaCl) and transferred into test tubes. The cells in the test tubes were agitated and 100 µL was taken ~0.5 cm from the surface every 10 min for the first 60 min; then every hour for the next 3 hours and again at 18 hours and 18.5 hours. The samples were also subjected to OD590 measurements using a microplate and the SoftMax Pro Software.

Results
Uoflagfigure2.png



Figure 2. E. coli DH5a cells containing BBa_K542009. Cultures were first agitated and then sedimentation rates were monitored. (a) Initial reading at the beginning of the experiment for the induced and uninduced. (b) Initial reading for the blank and 30 min after agitation for the induced and uninduced. (c) 3.5 hr after agitation for the blank and 4 hr after agitation for the induced and uninduced. (d) 17.5 hr after agitation for the blank and 18 hr after agitation for the induced and uninduced.

Uoflagfigure3.png



Figure 3. Microplate readings at 590nm for samples taken from the sedimentation assay using SoftMax Pro Software. Increase in absorbance at 150 min may have been due to the aggregation of the cells on the microplate prior to taking the measurement.

Conclusion

There is a significant difference between the aggregation of cells with the Antigen43 construct (BBa_K542009) and the cells without the construct after 18 hours. The pLacI promoter is known to be leaky. This was illustrated by the similarity between the uninduced and induced samples (Figures 2 and 3). These experiments support the conclusion that BBa_K542009 works as expected and the induced cells exhibit sedimentation.


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