Difference between revisions of "Part:BBa K628006"
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The kill switch functions by producing protegrin-1 intracellularly, and concerns were raised about whether antimicrobial peptides would function integrating into the inner phospholipid bilayer leaf, rather than the outer leaf like they do in nature.  Protegrin-1 integrates into membranes containing zwitterionic phospholipids, which promote electrostatic interactions between protegrin-1 and the bilayer.  As these are present in both the outer and inner leaflets of prokaryotic bacterial membranes, we believe this antimicrobial effect, and therefore, the functionality of the kill switch, should still be present despite the kill switch activating intracellularly.  More information on this issue can be found on our wiki: http://2011.igem.org/Team:St_Andrews/switch
 
The kill switch functions by producing protegrin-1 intracellularly, and concerns were raised about whether antimicrobial peptides would function integrating into the inner phospholipid bilayer leaf, rather than the outer leaf like they do in nature.  Protegrin-1 integrates into membranes containing zwitterionic phospholipids, which promote electrostatic interactions between protegrin-1 and the bilayer.  As these are present in both the outer and inner leaflets of prokaryotic bacterial membranes, we believe this antimicrobial effect, and therefore, the functionality of the kill switch, should still be present despite the kill switch activating intracellularly.  More information on this issue can be found on our wiki: http://2011.igem.org/Team:St_Andrews/switch
  
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[[Image:https://static.igem.org/mediawiki/2011/2/28/St_a_graph1.png]]
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[[Image:[[Image:"https://static.igem.org/mediawiki/2011/2/28/St_a_graph1.png"/]]]
  
 
   
 
   

Revision as of 03:16, 22 September 2011

Protegrin-1 Kill Switch

This part functions as a protegrin-1 (antimicrobial peptide), pBad strong (arabinose-sensitive inducible promoter) controlled E. coli kill switch.


Usage and Biology

Protegrin-1 coding region under the influence of a pBad-strong promoter. Protegrin-1 is an '18-residue beta-sheet peptide isolated from porcine leukocytes with antimicrobial activity against a broad range of microorganisms.' (Steinberg et al 1997) It has its effect by pore membrane disruption (Lam et al 2006) and possibly also by effects such as activation of membrane-damaging proteases (Bierbaum 1985) and has anti-microbial activity against E. coli (Aumelas 2004).

The presence of the pBad strong promoter allows the expression of protegrin-1 to be induced quickly, but at various rates by differing concentrations of arabinose.

The kill switch functions by producing protegrin-1 intracellularly, and concerns were raised about whether antimicrobial peptides would function integrating into the inner phospholipid bilayer leaf, rather than the outer leaf like they do in nature. Protegrin-1 integrates into membranes containing zwitterionic phospholipids, which promote electrostatic interactions between protegrin-1 and the bilayer. As these are present in both the outer and inner leaflets of prokaryotic bacterial membranes, we believe this antimicrobial effect, and therefore, the functionality of the kill switch, should still be present despite the kill switch activating intracellularly. More information on this issue can be found on our wiki: http://2011.igem.org/Team:St_Andrews/switch

[[Image:File:"https://static.igem.org/mediawiki/2011/2/28/St a graph1.png"/]


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 125
    Illegal NotI site found at 164
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 65
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]



References

Steinberg et al (1997) 'Protegrin-1: a broad-spectrum, rapidly microbicidal peptide with in vivo activity Antimicrobial Agents and Chemotherapy', Aug 1997, 1738-1742, Vol 41, No. 8

Lam et al (2006) 'Mechanism of Supported Membrane Disruption by Antimicrobial Peptide Protegrin-1' J. Phys. Chem. B, 2006, 110 (42), pp 21282–21286

Bierbaum, G. & Sahl, H.-G (1985) 'Induction of autolysis of Staphylocci by the basic peptide antibiotics pep5 and nisin and their influence on the activity of autolytic enzymes.' Arch. Microbiol. 141, 249 ± 254

Aumelas et al. (2004) 'Synthesis and Solution Structure of the Antimicrobial Peptide Protegrin-1' European Journal of Biochemistry Volume 237, Issue 3, pages 575–583, May 1996