Difference between revisions of "Part:BBa K395602:Experience"
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how you used this part and how it worked out. | how you used this part and how it worked out. | ||
| − | + | ==Applications of BBa_K395602== | |
We performed gas chromatography to confirm the production of the esters, and the results revealed that MpAAT1 successfully converted alcohol and Acetyl CoA into our target esters (Fig. 1). | We performed gas chromatography to confirm the production of the esters, and the results revealed that MpAAT1 successfully converted alcohol and Acetyl CoA into our target esters (Fig. 1). | ||
| Line 10: | Line 10: | ||
| − | + | *Strains of ''E. coli''<br/> | |
| − | ''E. coli'' BL21 (DE3) | + | :''E. coli'' BL21 (DE3) |
| − | + | *Varieties of plasmid<br/> | |
| − | MpAAT1 on pSB6A1 | + | :MpAAT1 on pSB6A1 |
| − | Trx on pACYC184 | + | :Trx on pACYC184 |
| − | + | *Substrate<br/> | |
| − | Butanol (final 0.4%) | + | :Butanol (final 0.4%) |
| − | 2-methyl butanol (final 0.2%) | + | :2-methyl butanol (final 0.2%) |
| − | + | *Inducer<br/> | |
| − | 100 mM IPTG (final 100 μM) | + | :100 mM IPTG (final 100 μM) |
| − | 20% arabinose (final 0.1%) | + | :20% arabinose (final 0.1%) |
| − | + | *Internal standard solution<br/> | |
| − | Undecane solution: undecane 10 μL + ether 990 μL | + | :Undecane solution: undecane 10 μL + ether 990 μL |
| − | + | *MpAAT1 expression vector<br/> | |
The coding sequence of MpAAT1 gene was synthesized and optimized sequence by Mr.Gene. | The coding sequence of MpAAT1 gene was synthesized and optimized sequence by Mr.Gene. | ||
This artificial gene was ligated into vector pSB6A1 as MpAAT1 expression vector. | This artificial gene was ligated into vector pSB6A1 as MpAAT1 expression vector. | ||
| Line 42: | Line 42: | ||
| − | + | *MpAAT1 over expression conditions<br/> | |
Artificial gene has T7 promoter on the upstream of MpAAT1. | Artificial gene has T7 promoter on the upstream of MpAAT1. | ||
| − | This promoter works by taking over T7 RNA polymerase from E. coli. | + | This promoter works by taking over T7 RNA polymerase from ''E. coli''. |
| − | Therefore we utilized E. coli BL21 (DE3) which has T7 RNA polymerase. | + | Therefore we utilized ''E. coli'' BL21 (DE3) which has T7 RNA polymerase. |
Furthermore, arabinose was added in culture to induce Trx which has arabinose-induced promoter. | Furthermore, arabinose was added in culture to induce Trx which has arabinose-induced promoter. | ||
| − | + | *Cultivation <br/> | |
In order to express MpAAT1 and Trx in ''E. coli'' BL21 (DE3), we added 3 μL of 100 mM IPTG and 15 μL of 20% arabinose in 3ml LB culture. | In order to express MpAAT1 and Trx in ''E. coli'' BL21 (DE3), we added 3 μL of 100 mM IPTG and 15 μL of 20% arabinose in 3ml LB culture. | ||
| − | + | *Expression of MpAAT1 recombinant protein in ''E. coli'' | |
The cells were grown over night. The microbial solution was diluted 100-folds and grown for 2 hours in a fresh culture. After grown until the O.D. becomes 0.1, substrate and antibiotic, and inducer were added into the culture. This was grown overnight again. After the incubation, we centrifuged the solution (7000 × g, 3 min) and collected the supernatant. Then, ether was used to separate oil through liquid-liquid solution. (shake supernatant solution 0.5 mL, with ether 0.5 mL and undecane solution). Finally, the oil layer was collected and analyzed by gas chromatography. | The cells were grown over night. The microbial solution was diluted 100-folds and grown for 2 hours in a fresh culture. After grown until the O.D. becomes 0.1, substrate and antibiotic, and inducer were added into the culture. This was grown overnight again. After the incubation, we centrifuged the solution (7000 × g, 3 min) and collected the supernatant. Then, ether was used to separate oil through liquid-liquid solution. (shake supernatant solution 0.5 mL, with ether 0.5 mL and undecane solution). Finally, the oil layer was collected and analyzed by gas chromatography. | ||
| − | + | *Gas Chromatography analysis <br/> | |
Gas Chromatography : SHIMADZU GAS CHROMATOGRAPH GC-14B | Gas Chromatography : SHIMADZU GAS CHROMATOGRAPH GC-14B | ||
Column: J&W SCIENTIFIC, DB-17, Film thickness 0.25 μm, Column Dimensions 15 m × 0.320 mm, Temperature Limits 40°C to 280°C (300°C Program) | Column: J&W SCIENTIFIC, DB-17, Film thickness 0.25 μm, Column Dimensions 15 m × 0.320 mm, Temperature Limits 40°C to 280°C (300°C Program) | ||
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| − | (→[http://2010.igem.org/Team:Tokyo_Tech/Project/Apple_Reporter2 | + | (→[http://2010.igem.org/Team:Tokyo_Tech/Project/Apple_Reporter2 Tokyo_Tech2010 wiki]) |
===User Reviews=== | ===User Reviews=== | ||
Revision as of 23:28, 6 November 2010
This experience page is provided so that any user may enter their experience using this part.
Please enter
how you used this part and how it worked out.
Applications of BBa_K395602
We performed gas chromatography to confirm the production of the esters, and the results revealed that MpAAT1 successfully converted alcohol and Acetyl CoA into our target esters (Fig. 1).
- Strains of E. coli
- E. coli BL21 (DE3)
- Varieties of plasmid
- MpAAT1 on pSB6A1
- Trx on pACYC184
- Substrate
- Butanol (final 0.4%)
- 2-methyl butanol (final 0.2%)
- Inducer
- 100 mM IPTG (final 100 μM)
- 20% arabinose (final 0.1%)
- Internal standard solution
- Undecane solution: undecane 10 μL + ether 990 μL
- MpAAT1 expression vector
The coding sequence of MpAAT1 gene was synthesized and optimized sequence by Mr.Gene. This artificial gene was ligated into vector pSB6A1 as MpAAT1 expression vector. Moreover, we introduced pTrx6 into this expression plasmid to stabilize the MpAAT1 gene product.
- MpAAT1 over expression conditions
Artificial gene has T7 promoter on the upstream of MpAAT1. This promoter works by taking over T7 RNA polymerase from E. coli. Therefore we utilized E. coli BL21 (DE3) which has T7 RNA polymerase. Furthermore, arabinose was added in culture to induce Trx which has arabinose-induced promoter.
- Cultivation
In order to express MpAAT1 and Trx in E. coli BL21 (DE3), we added 3 μL of 100 mM IPTG and 15 μL of 20% arabinose in 3ml LB culture.
- Expression of MpAAT1 recombinant protein in E. coli
The cells were grown over night. The microbial solution was diluted 100-folds and grown for 2 hours in a fresh culture. After grown until the O.D. becomes 0.1, substrate and antibiotic, and inducer were added into the culture. This was grown overnight again. After the incubation, we centrifuged the solution (7000 × g, 3 min) and collected the supernatant. Then, ether was used to separate oil through liquid-liquid solution. (shake supernatant solution 0.5 mL, with ether 0.5 mL and undecane solution). Finally, the oil layer was collected and analyzed by gas chromatography.
- Gas Chromatography analysis
Gas Chromatography : SHIMADZU GAS CHROMATOGRAPH GC-14B Column: J&W SCIENTIFIC, DB-17, Film thickness 0.25 μm, Column Dimensions 15 m × 0.320 mm, Temperature Limits 40°C to 280°C (300°C Program) Conditions: column temperature 35°C, injector temperature 180°C, detector temperature 180°C Sample was injected 5 μL.
(→[http://2010.igem.org/Team:Tokyo_Tech/Project/Apple_Reporter2 Tokyo_Tech2010 wiki])
User Reviews
UNIQ2bdb7c532e98d936-partinfo-00000000-QINU UNIQ2bdb7c532e98d936-partinfo-00000001-QINU